Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9ERV7
DateWed Jul 10 14:21:35 BST 2013
Unique Job IDb131e76aa2a826d4
SequenceMAAVLEGQEP ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:83.393 Y:60.665 Z:70.723
Model (left) based on template c4d8oA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of the ankyrin-b zu5-zu5-upa-dd tandem
Confidence and coverage
Confidence:100.0% Coverage: 53%
484 residues ( 53% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
788 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAAVLEGQEPEETAAAAEDAATSTLEAVDAGPGAPFLPAGNQLNLDLRPGGCHRLQYLCS
Secondary structure 
SS confidence 
Disorder  ???
?
????????????????????????
???
????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLT
Secondary structure 
SS confidence 
Disorder 
???
?
??
?
????????
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TLPAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPAS
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LAGLRSLRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPAELLDAPFVRLQGNPL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GEASPAPPSPPDISQVPEMPRLLLTSDLDSFLVTPHGCSVTLACGVRLQFPAGATTTPVT
Secondary structure 
SS confidence 
Disorder 
??????
?
????
???
?
?????
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  IHYRLWLPEPGLVSLGPHDFLLSSVLELQPHGVAFQQDVSLWLLFVPPRVRRCREVVVRT
Secondary structure 
SS confidence 
Disorder 
????
???
???
?
?????
???
?
???
???
?
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  RSNNTWNDLETQLEEEAPKRLWARCQVPHFSWFLVVLRPVSNTCLLPPEGALLCSSGHPG
Secondary structure 
SS confidence 
Disorder 
????
??
?
?????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  VRVTFPPGVTEEPRQVSMQVVHMAGLELRTLLEESEASVSPLLCLSQSGPPSFLQPVTVQ
Secondary structure 
SS confidence 
Disorder 
?
?????????
?
?
???
?
????
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  LPLPPGVTGFSLDRSHLHLLYRTPLTTTWDDITTQVALEFTHLYARFQVTHFSWYWLWYT
Secondary structure 
SS confidence 
Disorder 
?????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  TKTCVGGLARKAWERLRLHRVNLIALQRRRDPEQVLLQCLPRNKVDATLSRLLVRYRGPE
Secondary structure 
SS confidence 
Disorder 
???????
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  PSETVEMFEGEKFFAAFERGIDVDADRPDCVDGRICFVFYSHLKNVKEVYITTALDREAQ
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  DVRGQVSFYRGSLPVEVPAEAEAARQRKGTDALWMATLPIKLPRLRGAQGSGQGTDFSLM
Secondary structure 
SS confidence 
Disorder 
?????????????????
?????????????????
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  PLNLGDAETGFLTQSNLLSVASRLGPDWPAVALHLGMPYHKLQRIRHEFRDDLDGQVRHM
Secondary structure 
SS confidence 
Disorder 
?
????
???
?
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  LFSWAERQTGQPGAVGHLVQALEQSDRRDVAEEVRAILELGRHKYQDSIRRTGLAPEDST
Secondary structure 
SS confidence 
Disorder 
????????
?????????
???????
????
Disorder confidence 
 
   .........910.....
Sequence  LPGTSASQTPESAQA
Secondary structure 
SS confidence 
Disorder  ???????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 29%)
Alpha helix ( 23%)
Beta strand ( 20%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 4d8o chain A

3D model

Region: 325 - 871
Aligned: 484
Modelled: 484
Confidence: 100.0%
Identity: 25%
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of the ankyrin-b zu5-zu5-upa-dd tandem

Phyre2

PDB 3ud2 chain C

3D model

Region: 326 - 616
Aligned: 289
Modelled: 291
Confidence: 100.0%
Identity: 25%
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin

Phyre2

PDB 3g5b chain A

3D model

Region: 463 - 875
Aligned: 363
Modelled: 378
Confidence: 100.0%
Identity: 16%
PDB header:apoptosis
Chain: A: PDB Molecule:netrin receptor unc5b;
PDBTitle: the structure of unc5b cytoplasmic domain

Phyre2

PDB 4ecn chain A

3D model

Region: 63 - 299
Aligned: 223
Modelled: 225
Confidence: 100.0%
Identity: 16%
PDB header:unknown function
Chain: A: PDB Molecule:leucine-rich repeat protein;
PDBTitle: crystal structure of a leucine-rich repeat protein (bt_0210) from2 bacteroides thetaiotaomicron vpi-5482 at 2.80 a resolution

Phyre2

PDB 4eco chain A

3D model

Region: 63 - 310
Aligned: 243
Modelled: 243
Confidence: 100.0%
Identity: 19%
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein (bacegg_03329) from2 bacteroides eggerthii dsm 20697 at 2.70 a resolution

Phyre2

PDB 3rgx chain A

3D model

Region: 43 - 311
Aligned: 253
Modelled: 251
Confidence: 100.0%
Identity: 38%
PDB header:transferase
Chain: A: PDB Molecule:protein brassinosteroid insensitive 1;
PDBTitle: structural insight into brassinosteroid perception by bri1

Phyre2

PDB 1ziw chain A

3D model

Region: 35 - 302
Aligned: 250
Modelled: 267
Confidence: 100.0%
Identity: 31%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: human toll-like receptor 3 extracellular domain structure

Phyre2

PDB 3oja chain A

3D model

Region: 44 - 300
Aligned: 233
Modelled: 236
Confidence: 99.9%
Identity: 23%
PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 3oja chain B

3D model

Region: 32 - 299
Aligned: 253
Modelled: 253
Confidence: 99.9%
Identity: 26%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 1m9s chain A

3D model

Region: 73 - 284
Aligned: 187
Modelled: 198
Confidence: 99.9%
Identity: 25%
PDB header:signaling protein
Chain: A: PDB Molecule:internalin b;
PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.

Phyre2

PDB 4hq1 chain A

3D model

Region: 93 - 300
Aligned: 196
Modelled: 208
Confidence: 99.9%
Identity: 38%
PDB header:transferase
Chain: A: PDB Molecule:probable receptor protein kinase tmk1;
PDBTitle: crystal structure of an lrr protein with two solenoids

Phyre2

PDB 2z64 chain A

3D model

Region: 32 - 302
Aligned: 253
Modelled: 271
Confidence: 99.9%
Identity: 31%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex

Phyre2

PDB 4g8a chain B

3D model

Region: 32 - 300
Aligned: 251
Modelled: 269
Confidence: 99.9%
Identity: 36%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of human tlr4 polymorphic variant d299g and t399i in2 complex with md-2 and lps

Phyre2

PDB 3a79 chain B

3D model

Region: 109 - 302
Aligned: 190
Modelled: 191
Confidence: 99.9%
Identity: 45%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex

Phyre2

PDB 1wwl chain A

3D model

Region: 63 - 304
Aligned: 228
Modelled: 242
Confidence: 99.9%
Identity: 26%
PDB header:immune system
Chain: A: PDB Molecule:monocyte differentiation antigen cd14;
PDBTitle: crystal structure of cd14

Phyre2

PDB 3g06 chain A

3D model

Region: 41 - 302
Aligned: 221
Modelled: 241
Confidence: 99.9%
Identity: 35%
PDB header:ligase
Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein);
PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase

Phyre2

PDB 4kt1 chain A

3D model

Region: 121 - 339
Aligned: 217
Modelled: 219
Confidence: 99.9%
Identity: 38%
PDB header:hormone receptor/cell adhesion
Chain: A: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: complex of r-spondin 1 with lgr4 extracellular domain

Phyre2

PDB 3cvr chain A

3D model

Region: 95 - 302
Aligned: 175
Modelled: 181
Confidence: 99.9%
Identity: 33%
PDB header:ligase
Chain: A: PDB Molecule:invasion plasmid antigen;
PDBTitle: crystal structure of the full length ipah3

Phyre2

PDB 3a79 chain A

3D model

Region: 44 - 302
Aligned: 232
Modelled: 255
Confidence: 99.9%
Identity: 31%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex

Phyre2

PDB 4bst chain B

3D model

Region: 62 - 278
Aligned: 197
Modelled: 213
Confidence: 99.9%
Identity: 47%
PDB header:signaling protein
Chain: B: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: structure of the ectodomain of lgr5 in complex with r-spondin-12 (fu1fu2) in p6122 crystal form

Phyre2

PDB 2yqf chain A

3D model

Region: 783 - 891
Aligned: 105
Modelled: 105
Confidence: 99.9%
Identity: 24%
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: solution structure of the death domain of ankyrin-1

Phyre2
1
c4d8oA_
2
c3ud2C_
3
c3g5bA_
4
c4ecnA_
5
c4ecoA_
6
c3rgxA_
7
c1ziwA_
8
c3ojaA_
9
c3ojaB_
10
c1m9sA_
11
c4hq1A_
12
c2z64A_
13
c4g8aB_
14
c3a79B_
15
c1wwlA_
16
c3g06A_
17
c4kt1A_
18
c3cvrA_
19
c3a79A_
20
c4bstB_
21
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c2yqfA_
36
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4d8oA_
100.0 25 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of the ankyrin-b zu5-zu5-upa-dd tandem
2c3ud2C_
100.0 25 PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin
3c3g5bA_
100.0 16 PDB header:apoptosis
Chain: A: PDB Molecule:netrin receptor unc5b;
PDBTitle: the structure of unc5b cytoplasmic domain
4c4ecnA_
100.0 16 PDB header:unknown function
Chain: A: PDB Molecule:leucine-rich repeat protein;
PDBTitle: crystal structure of a leucine-rich repeat protein (bt_0210) from2 bacteroides thetaiotaomicron vpi-5482 at 2.80 a resolution
5c4ecoA_
100.0 19 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein (bacegg_03329) from2 bacteroides eggerthii dsm 20697 at 2.70 a resolution
6c3rgxA_
100.0 38 PDB header:transferase
Chain: A: PDB Molecule:protein brassinosteroid insensitive 1;
PDBTitle: structural insight into brassinosteroid perception by bri1
7c1ziwA_
100.0 31 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: human toll-like receptor 3 extracellular domain structure
8c3ojaA_
99.9 23 PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
9c3ojaB_
99.9 26 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
10c1m9sA_
99.9 25 PDB header:signaling protein
Chain: A: PDB Molecule:internalin b;
PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
11c4hq1A_
99.9 38 PDB header:transferase
Chain: A: PDB Molecule:probable receptor protein kinase tmk1;
PDBTitle: crystal structure of an lrr protein with two solenoids
12c2z64A_
99.9 31 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex
13c4g8aB_
99.9 36 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of human tlr4 polymorphic variant d299g and t399i in2 complex with md-2 and lps
14c3a79B_
99.9 45 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
15c1wwlA_
99.9 26 PDB header:immune system
Chain: A: PDB Molecule:monocyte differentiation antigen cd14;
PDBTitle: crystal structure of cd14
16c3g06A_
99.9 35 PDB header:ligase
Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein);
PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
17c4kt1A_
99.9 38 PDB header:hormone receptor/cell adhesion
Chain: A: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: complex of r-spondin 1 with lgr4 extracellular domain
18c3cvrA_
99.9 33 PDB header:ligase
Chain: A: PDB Molecule:invasion plasmid antigen;
PDBTitle: crystal structure of the full length ipah3
19c3a79A_
99.9 31 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
20c4bstB_
99.9 47 PDB header:signaling protein
Chain: B: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: structure of the ectodomain of lgr5 in complex with r-spondin-12 (fu1fu2) in p6122 crystal form
21c2of5K_
not modelled 99.9 86 PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing
PDBTitle: oligomeric death domain complex
22c2z7xB_
not modelled 99.9 43 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
23c2z81A_
not modelled 99.9 31 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
24c2a0zA_
not modelled 99.9 26 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain
25c3f59A_
not modelled 99.9 29 PDB header:structural protein
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin
26c3j0aA_
not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 5;
PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction
27c4glpA_
not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:monocyte differentiation antigen cd14;
PDBTitle: the crystal structure of soluble human cd14 reveals a bent solenoid2 with a hydrophobic amino-terminal pocket.
28c4bsrB_
not modelled 99.9 41 PDB header:signaling protein
Chain: B: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: structure of the ectodomain of lgr5 in complex with r-spondin-12 (fu1fu2) in p22121 crystal form
29c2id5D_
not modelled 99.9 29 PDB header:ligand binding protein,membrane protein
Chain: D: PDB Molecule:leucine rich repeat neuronal 6a;
PDBTitle: crystal structure of the lingo-1 ectodomain
30d2omza2
not modelled 99.9 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
31c3rg1B_
not modelled 99.9 22 PDB header:immune system
Chain: B: PDB Molecule:cd180 molecule;
PDBTitle: crystal structure of the rp105/md-1 complex
32c3w3jB_
not modelled 99.9 27 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 8;
PDBTitle: crystal structure of human tlr8 in complex with cl097
33c2xotA_
not modelled 99.9 32 PDB header:cell adhesion
Chain: A: PDB Molecule:amphoterin-induced protein 1;
PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1
34c3v47B_
not modelled 99.9 24 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61
PDBTitle: crystal structure of the n-tetminal fragment of zebrafish tlr5 in2 complex with salmonella flagellin
35c2yqfA_
99.9 24 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: solution structure of the death domain of ankyrin-1
36c3fxiA_
not modelled 99.9 24 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex
37c3j0aB_
not modelled 99.9 26 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 5;
PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction
38c2ft3B_
not modelled 99.9 29 PDB header:structural protein, signaling protein
Chain: B: PDB Molecule:biglycan;
PDBTitle: crystal structure of the biglycan dimer core protein
39c2omwA_
not modelled 99.8 26 PDB header:cell invasion/cell adhesion
Chain: A: PDB Molecule:internalin-a;
PDBTitle: crystal structure of inla s192n y369s/mec1 complex
40c3v44A_
not modelled 99.8 23 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61
PDBTitle: crystal structure of the n-terminal fragment of zebrafish tlr5
41c3rg1I_
not modelled 99.8 31 PDB header:immune system
Chain: I: PDB Molecule:cd180 molecule;
PDBTitle: crystal structure of the rp105/md-1 complex
42d1xkua_
not modelled 99.8 27 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
43c1xkuA_
not modelled 99.8 27 PDB header:structural protein
Chain: A: PDB Molecule:decorin;
PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan
44c2z63A_
not modelled 99.8 23 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61
45c1ltxA_
not modelled 99.8 35 PDB header:transferase/protein binding
Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
46c4fcgA_
not modelled 99.8 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the leucine-rich repeat domain of the type iii effector2 xcv3220 (xopl)
47c1wxpA_
not modelled 99.8 22 PDB header:transport protein
Chain: A: PDB Molecule:tho complex subunit 1;
PDBTitle: solution structure of the death domain of nuclear matrix2 protein p84
48c4b8cD_
not modelled 99.8 28 PDB header:hydrolase/cell cycle
Chain: D: PDB Molecule:glucose-repressible alcohol dehydrogenase transcriptional
PDBTitle: nuclease module of the yeast ccr4-not complex
49c4arnD_
not modelled 99.8 23 PDB header:immune system
Chain: D: PDB Molecule:toll receptor, variable lymphocyte receptor b.61 chimera;
PDBTitle: crystal structure of the n-terminal domain of drosophila toll2 receptor
50c1ookG_
not modelled 99.8 33 PDB header:hydrolase
Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor;
PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin
51d1ddfa_
not modelled 99.8 17 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
52c4k5uD_
not modelled 99.8 27 PDB header:immune system
Chain: D: PDB Molecule:variable lymphocyte receptor;
PDBTitle: recognition of the bg-h antigen by a lamprey variable lymphocyte2 receptor
53d1ogqa_
not modelled 99.8 30 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Polygalacturonase inhibiting protein PGIP
54d1p9ag_
not modelled 99.8 34 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
55d1fada_
not modelled 99.8 24 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
56c3o6nA_
not modelled 99.8 27 PDB header:protein binding
Chain: A: PDB Molecule:apl1;
PDBTitle: crystal structure of apl1 leucine-rich repeat domain
57c3e6jA_
not modelled 99.8 29 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor diversity region;
PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide
58c3oq9C_
not modelled 99.8 17 PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: structure of the fas/fadd death domain assembly
59c2o6sA_
not modelled 99.8 28 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59
60c2o6qA_
not modelled 99.8 34 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor a;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29
61c1ichA_
not modelled 99.8 22 PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor-1;
PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain
62d1icha_
not modelled 99.8 22 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
63c2gf5A_
not modelled 99.8 24 PDB header:apoptosis
Chain: A: PDB Molecule:fadd protein;
PDBTitle: structure of intact fadd (mort1)
64c3bz5A_
not modelled 99.8 26 PDB header:cell adhesion
Chain: A: PDB Molecule:internalin-j;
PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder
65c2of5A_
not modelled 99.8 21 PDB header:apoptosis
Chain: A: PDB Molecule:death domain-containing protein cradd;
PDBTitle: oligomeric death domain complex
66c4fmzA_
not modelled 99.8 36 PDB header:cell adhesion, cell invasion
Chain: A: PDB Molecule:internalin;
PDBTitle: crystal structure of an internalin (inlf) from listeria monocytogenes2 str. 4b f2365 at 1.91 a resolution
67c1g9uA_
not modelled 99.8 40 PDB header:toxin
Chain: A: PDB Molecule:outer protein yopm;
PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis
68d2gf5a1
not modelled 99.8 25 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
69d1jl5a_
not modelled 99.8 40 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Leucine rich effector protein YopM
70c2z80A_
not modelled 99.8 32 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
71c4b8cL_
not modelled 99.8 29 PDB header:hydrolase/cell cycle
Chain: L: PDB Molecule:glucose-repressible alcohol dehydrogenase transcriptional
PDBTitle: nuclease module of the yeast ccr4-not complex
72c3o53A_
not modelled 99.8 23 PDB header:protein binding
Chain: A: PDB Molecule:protein lrim1;
PDBTitle: crystal structure of lrim1 leucine-rich repeat domain
73c3rfsA_
not modelled 99.7 25 PDB header:protein binding
Chain: A: PDB Molecule:internalin b, repeat modules, variable lymphocyte receptor
PDBTitle: design of a binding scaffold based on variable lymphocyte receptors of2 jawless vertebrates by module engineering
74c3m18A_
not modelled 99.7 27 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region;
PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme
75d2omxa2
not modelled 99.7 26 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
76d2astb2
not modelled 99.7 19 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:Cyclin A/CDK2-associated p19, Skp2
77c1h6uA_
not modelled 99.7 25 PDB header:cell adhesion
Chain: A: PDB Molecule:internalin h;
PDBTitle: internalin h: crystal structure of fused n-terminal2 domains.
78c4ay9Z_
not modelled 99.7 28 PDB header:hormone/receptor
Chain: Z: PDB Molecule:follicle-stimulating hormone receptor;
PDBTitle: structure of follicle-stimulating hormone in complex with2 the entire ectodomain of its receptor
79c2ra8A_
not modelled 99.7 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr;
PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43
80c2o6rA_
not modelled 99.7 27 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61
81c2v9sC_
not modelled 99.7 24 PDB header:structural protein
Chain: C: PDB Molecule:slit homolog 2 protein n-product;
PDBTitle: second lrr domain of human slit2
82c2v70D_
not modelled 99.7 28 PDB header:structural protein
Chain: D: PDB Molecule:slit homolog 2 protein n-product;
PDBTitle: third lrr domain of human slit2
83c2z62A_
not modelled 99.7 29 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61
84d1ozna_
not modelled 99.7 27 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
85c2je0E_
not modelled 99.6 26 PDB header:nuclear protein
Chain: E: PDB Molecule:acidic leucine-rich nuclear phosphoprotein 32 family
PDBTitle: crystal structure of pp32
86c4ezgB_
not modelled 99.6 20 PDB header:cell adhesion
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a leucine rich hypothetical protein2 (lmof2365_1307) from listeria monocytogenes str. li 2 at 1.50 a3 resolution
87d2bnha_
not modelled 99.6 25 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:28-residue LRR
88c2wfhB_
not modelled 99.6 33 PDB header:splicing
Chain: B: PDB Molecule:slit homolog 2 protein c-product;
PDBTitle: the human slit 2 dimerization domain d4
89c2ib1A_
not modelled 99.6 20 PDB header:apoptosis
Chain: A: PDB Molecule:death domain containing membrane protein nradd;
PDBTitle: solution structure of p45 death domain
90c2r9uC_
not modelled 99.6 26 PDB header:immune system
Chain: C: PDB Molecule:variable lymphocyte receptor;
PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain
91d1dcea3
not modelled 99.6 35 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
92d1h6ta2
not modelled 99.6 24 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
93c2z66A_
not modelled 99.6 24 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4;
PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
94d1w8aa_
not modelled 99.6 26 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
95c1otnA_
not modelled 99.6 24 PDB header:cell adhesion
Chain: A: PDB Molecule:internalin b;
PDBTitle: calcium-binding mutant of the internalin b lrr domain
96d1z7xw1
not modelled 99.6 47 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:28-residue LRR
97c2y5qA_
not modelled 99.6 24 PDB header:protein binding
Chain: A: PDB Molecule:internalin b;
PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392
98c1xeuA_
not modelled 99.6 29 PDB header:cell invasion
Chain: A: PDB Molecule:internalin c;
PDBTitle: crystal structure of internalin c from listeria2 monocytogenes
99c3g3aA_
not modelled 99.5 24 PDB header:hydrolase/immune system
Chain: A: PDB Molecule:variable lymphocyte receptor vlrb.2d;
PDBTitle: structure of a lamprey variable lymphocyte receptor in2 complex with a protein antigen
100d1h6ua2
not modelled 99.5 23 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
101d2ifga3
not modelled 99.5 24 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
102c3g04C_
not modelled 99.5 19 PDB header:immune system
Chain: C: PDB Molecule:thyrotropin receptor;
PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody
103d1a9na_
not modelled 99.5 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:U2A'-like
104c2uzyA_
not modelled 99.5 21 PDB header:signaling protein/receptor
Chain: A: PDB Molecule:internalin b;
PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii
105d1xwdc1
not modelled 99.5 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
106d2ca6a1
not modelled 99.4 24 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:Rna1p (RanGAP1), N-terminal domain
107c1k5dL_
not modelled 99.4 19 PDB header:signaling protein/signaling activator
Chain: L: PDB Molecule:ran gtpase activating protein 1;
PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex
108d1m9la_
not modelled 99.4 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:Outer arm dynein light chain 1
Family:Outer arm dynein light chain 1
109d1ngra_
not modelled 99.4 27 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
110c2ifgB_
not modelled 99.4 23 PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: structure of the extracellular segment of human trka in complex with2 nerve growth factor
111c2kxrA_
not modelled 99.3 25 PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: zo1 zu5 domain mc/aa mutation
112c2kxsA_
not modelled 99.3 22 PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1, linker, peptide of myocardium-
PDBTitle: zo1 zu5 domain in complex with grinl1a peptide
113c3un9A_
not modelled 99.3 26 PDB header:immune system
Chain: A: PDB Molecule:nlr family member x1;
PDBTitle: crystal structure of an immune receptor
114c3mopC_
not modelled 99.3 28 PDB header:signaling protein, immune system
Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88;
PDBTitle: the ternary death domain complex of myd88, irak4, and irak2
115c2p1nE_
not modelled 99.3 15 PDB header:signaling protein
Chain: E: PDB Molecule:transport inhibitor response 1 protein;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
116d1fs2a2
not modelled 99.2 21 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:Cyclin A/CDK2-associated p19, Skp2
117c3gozA_
not modelled 99.2 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:leucine-rich repeat-containing protein;
PDBTitle: crystal structure of the leucine-rich repeat-containing2 protein legl7 from legionella pneumophila. northeast3 structural genomics consortium target lgr148
118c3oglD_
not modelled 99.1 18 PDB header:protein binding
Chain: D: PDB Molecule:coronatine-insensitive protein 1;
PDBTitle: structure of coi1-ask1 in complex with ja-isoleucine and the jaz12 degron
119c3ogmB_
not modelled 99.1 18 PDB header:protein binding
Chain: B: PDB Molecule:coronatine-insensitive protein 1;
PDBTitle: structure of coi1-ask1 in complex with coronatine and the jaz1 degron
120d1d2za_
not modelled 99.1 13 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD

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