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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2p1nE_

Fold library idPDB HeaderMoleculeTitle
c2p1nE_PDB header: signaling proteinChain: E: PDB Molecule: transport inhibitor response 1 protein;PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase


Added to library: Tue Mar 16 13:06:29 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKP
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Known secondary structure (DSSP)


TT


TTS


SSTTSS

TT


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG
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Known secondary structure (DSSP) GGGGGT
S
TTS

B

TT

S
B


TT

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK
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Known secondary structure (DSSP)
TT


TT



GGGGGGS
TT





TT

S


T
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV
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Known secondary structure (DSSP)

TTS
T
TT
S
S






T
TT



TT

GGGGGGGSGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV
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Known secondary structure (DSSP) GGS
S
TT



TT
TT

TTS

TT


S
TT
SS
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI
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Known secondary structure (DSSP)



TT

S



TT

SSTT


TTT


T
 .........430.........440.........450.........460.........470.........480.........490
Sequence VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA
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Known secondary structure (DSSP)
TT



SS


TT

S

SS
TT

S
S
B
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRF
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Known secondary structure (DSSP) TSGGGGGSSSSB
B
TT
TTS
GGGS
TTSB
S
SS
S
S
 .........570.
Sequence DMPGFVWNMDQ
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Known secondary structure (DSSP)


TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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