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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2xotA_ | PDB header: cell adhesion | Chain: A: PDB Molecule: amphoterin-induced protein 1; | PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1 |
Added to library: Sat Sep 24 10:58:27 2011 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | R | S | V | V | S | C | P | A | N | C | L | C | A | S | N | I | L | S | C | S | K | Q | Q | L | P | N | V | P | Q | S | L | P | S | Y | T | A | L | L | D | L | S | H | N | N | L | S | R | L | R | A | E | W | T | P | T | R | L | T | N | L | H | S | L | L | L | S | H | N | H | L |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | S | S | S | S | S | S | T | T | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | T | T | S | S | S | S | T | T | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | N | F | I | S | S | E | A | F | V | P | V | P | N | L | R | Y | L | D | L | S | S | N | H | L | H | T | L | D | E | F | L | F | S | D | L | Q | A | L | E | V | L | L | L | Y | N | N | H | I | V | V | V | D | R | N | A | F | E | D | M | A | Q | L | Q | K | L | Y | L | S | Q | N |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | Q | I | S | R | F | P | V | E | L | I | K | L | P | K | L | M | L | L | D | L | S | S | N | K | L | K | K | L | P | L | T | D | L | Q | K | L | P | A | W | V | K | N | G | L | Y | L | H | N | N | P | L | E | C | D | C | K | L | Y | Q | L | F | S | H | W | Q | Y | R | Q | L | S |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | G | G | G | T | T | T | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Sequence | S | V | M | D | F | Q | E | D | L | Y | C | M | H | S | K | K | L | H | N | I | F | S | L | D | F | F | N | C | S | E | Y | K | E | S | A | W | E | A | H | L | G | D | T | L | T | I | R | C | D | T | K | Q | Q | G | M | T | K | V | W | V | S | P | S | N | E | Q | V | L | S | Q |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | T | T | G | G | G | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | G | G | G | T | T | S | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | S | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | B | S |   | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . |
Sequence | G | S | N | G | S | V | S | V | R | N | G | D | L | F | F | K | K | V | Q | V | E | D | G | G | V | Y | T | C | Y | A | M | G | E | T | F | N | E | T | L | S | V | E | L | K | V | Y | N | F | T | L | H | |||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | S | S | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S |
Download: | PDB structure | FASTA sequence |
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