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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2z62A_ | PDB header: immune system | Chain: A: PDB Molecule: toll-like receptor 4, variable lymphocyte receptor b; | PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61 |
Added to library: Tue Mar 16 11:55:00 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | E | P | C | V | E | V | V | P | N | I | T | Y | Q | C | M | E | L | N | F | Y | K | I | P | D | N | L | P | F | S | T | K | N | L | D | L | S | F | N | P | L | R | H | L | G | S | Y | S | F | F | S | F | P | E | L | Q | V | L | D | L | S | R | C | E | I | Q | T | I | E | D | G |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | ![]() | ![]() | ![]() | ![]() | T | T | T | ![]() | ![]() | ![]() | T | T | S | S | S | S | S | S | T | T | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | T | T | T | T | T | T | T | T | S | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | T | T |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | A | Y | Q | S | L | S | H | L | S | T | L | I | L | T | G | N | P | I | Q | S | L | A | L | G | A | F | S | G | L | S | S | L | Q | K | L | V | A | V | E | T | N | L | A | S | L | E | N | F | P | I | G | H | L | K | T | L | K | E | L | N | V | A | H | N | L | I | Q | S | F | K |
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | T | T | S | S | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | L | P | E | Y | F | S | N | L | T | N | L | E | H | L | D | L | S | S | N | K | I | Q | S | I | Y | C | T | D | L | R | V | L | H | Q | M | P | L | L | N | L | S | L | D | L | S | L | N | P | M | N | F | I | Q | P | G | A | F | K | E | I | R | L | K | E | L | A | L | D | T | N |
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | G | G | G | G | G | T | T | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | G | G | G | G | ![]() | ![]() | ![]() | ![]() | T | T | T | ![]() | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | T | T | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . |
Sequence | Q | L | K | S | V | P | D | G | I | F | D | R | L | T | S | L | Q | K | I | W | L | H | T | N | P | W | D | C | S | C | P | R | I | D | Y | L | S | R | W | L | N | K | N | S | Q | K | E | Q | G | S | A | K | C | S | G | S | G | K | P | V | R | S | I | I | C | P | ||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | T | T | T | T | T | T | S | ![]() | ![]() | ![]() | S | S | B | T | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | G | G | G | B | S | B | B | T | T | T | B | G | G | G |
Download: | PDB structure | FASTA sequence |
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