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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2o6sA_ | PDB header: immune system | Chain: A: PDB Molecule: variable lymphocyte receptor b; | PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59 |
Added to library: Tue Mar 16 13:49:33 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | C | P | S | R | C | S | C | S | G | T | T | V | E | C | Y | S | Q | G | R | T | S | V | P | T | G | I | P | A | Q | T | T | Y | L | D | L | E | T | N | S | L | K | S | L | P | N | G | V | F | D | E | L | T | S | L | T | Q | L | Y | L | G | G | N | K | L | Q | S | L | P | N | G |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | S | S | S | S | S | T | T | S | ![]() | ![]() | ![]() | S | S | T | T | T | T | T | T | T | T | S | ![]() | ![]() | ![]() | S | S | T | T |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | V | F | N | K | L | T | S | L | T | Y | L | N | L | S | T | N | Q | L | Q | S | L | P | N | G | V | F | D | K | L | T | Q | L | K | E | L | A | L | N | T | N | Q | L | Q | S | L | P | D | G | V | F | D | K | L | T | Q | L | K | D | L | R | L | Y | Q | N | Q | L | K | S | V | P |
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
Sequence | D | G | V | F | D | R | L | T | S | L | Q | Y | I | W | L | H | D | N | P | W | D | C | T | C | P | G | I | R | Y | L | S | E | W | I | N | K | H | S | G | V | V | R | N | S | A | G | S | V | A | P | D | S | A | K | C | S | G | S | G | K | P | V | R | S | I | I | C | P | ||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | B | T | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | B | B | T | T | S | S | B | T | T | S | B | B | T | T | T | B | G | G | G |
Download: | PDB structure | FASTA sequence |
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