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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3m18A_ | PDB header: immune system | Chain: A: PDB Molecule: variable lymphocyte receptor a diversity region; | PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme |
Added to library: Sat Aug 28 20:49:19 2010 | |
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Links to external resources | |
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Sequence | T | C | E | T | V | T | G | C | T | C | N | E | G | K | K | E | V | D | C | Q | G | K | S | L | D | S | V | P | S | G | I | P | A | D | T | E | K | L | D | L | Q | S | T | G | L | A | T | L | S | D | A | T | F | R | G | L | T | K | L | T | W | L | N | L | D | Y | N | Q | L | Q |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | T | T | ![]() | ![]() | ![]() | T | T | T | T | ![]() | ![]() | ![]() | T | T | S | S | T | T | T | T | ![]() | ![]() | ![]() | T | T | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | T | T | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | T | L | S | A | G | V | F | D | D | L | T | E | L | G | T | L | G | L | A | N | N | Q | L | A | S | L | P | L | G | V | F | D | H | L | T | Q | L | D | K | L | Y | L | G | G | N | Q | L | K | S | L | P | S | G | V | F | D | R | L | T | K | L | K | E | L | R | L | N | T | N | Q |
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | T | T | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | L | Q | S | I | P | A | G | A | F | D | K | L | T | N | L | Q | T | L | S | L | S | T | N | Q | L | Q | S | V | P | H | G | A | F | D | R | L | G | K | L | Q | T | I | T | L | F | G | N | Q | F | D | C | S | R | C | E | T | L | Y | L | S | Q | W | I | R | E | N | S | N | K | V |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | B | T | T | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | G | G | G | B |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . |
Sequence | K | D | G | T | G | Q | N | L | H | E | S | P | D | G | V | T | C | S | D | G | K | V | V | R | T | V | T | N | E | T | L | K | Y | E | C | |||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | T | T | G | G | G | B | B | T | T | S | B | G | G | G | T | T | T | T | T | T | T |
Download: | PDB structure | FASTA sequence |
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