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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3e6jA_ | PDB header: immune system | Chain: A: PDB Molecule: variable lymphocyte receptor diversity region; | PDBTitle: crystal structure of variable lymphocyte receptor (vlr)2 rbc36 in complex with h-trisaccharide |
Added to library: Tue Mar 16 12:31:33 2010 | |
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Links to external resources | |
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Sequence | A | A | C | P | S | Q | C | S | C | S | G | T | T | V | D | C | R | S | K | R | H | A | S | V | P | A | G | I | P | T | N | A | Q | I | L | Y | L | H | D | N | Q | I | T | K | L | E | P | G | V | F | D | S | L | I | N | L | K | E | L | Y | L | G | S | N | Q | L | G | A | L | P |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | T | T | S | S | S | S | T | T | S | ![]() | ![]() | ![]() | S | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | V | G | V | F | D | S | L | T | Q | L | T | V | L | D | L | G | T | N | Q | L | T | V | L | P | S | A | V | F | D | R | L | V | H | L | K | E | L | F | M | C | C | N | K | L | T | E | L | P | R | G | I | E | R | L | T | H | L | T | H | L | A | L | D | Q | N | Q | L | K | S | I |
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | S | S | S | T | T | G | G | G | T | T | S | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | P | H | G | A | F | D | R | L | S | S | L | T | H | A | Y | L | F | G | N | P | W | D | C | E | C | R | D | I | M | Y | L | R | N | W | V | A | D | H | T | S | I | A | M | R | W | D | G | K | A | V | N | D | P | D | S | A | K | C | A | G | T | N | T | P | V | R | A | V | T | E |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | T | T | T | ![]() | ![]() | ![]() | T | T | S | B | T | T | B | G | G | G | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | T | T | S | B | B | T | T | T | B | G | G | G | G |   | . | . | . | . | . | . | . | . | . | ||||
Sequence | A | S | T | S | P | S | K | C | P | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | G | G | B | T | T | S |
Download: | PDB structure | FASTA sequence |
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