Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9HB75
DateWed May 9 17:48:56 BST 2012
Unique Job ID7e48d0e511d74c90

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c4d8oA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of the ankyrin-b zu5-zu5-upa-dd tandem
Confidence and coverage
Confidence:100.0% Coverage: 53%
481 residues ( 53% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
773 residues ( 85%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAATVEGPELEAAAAAGDASEDSDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQ
Secondary structure 
SS confidence 
Disorder  ???????
??
?
??
???
?
?
???
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAG
Secondary structure 
SS confidence 
Disorder 
?
?
??????????????
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALGALPALTFLTVTH
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  NRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLR
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPPELLDAPFVRLQGNPLGEASP
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  DAPSSPVAALIPEMPRLFLTSDLDSFPVTPQGCSVTLACGVRLQFPAGATATPITIRYRL
Secondary structure 
SS confidence 
Disorder 
?
?
????
????
?????????
????????
?
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LLPEPGLVPLGPHDALLSHVLELQPHGVAFQQDVGLWLLFTPPQARRCREVVVRTRNDNS
Secondary structure 
SS confidence 
Disorder  ?
??????????????????
??????????????????
????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  WGDLETYLEEEAPQRLWAHCQVPHFSWFLVVSRPVSNACLVPPEGTLLCSSGHPGVKVIF
Secondary structure 
SS confidence 
Disorder  ?
?????
?
?
???
???????????
??????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  PPGATEEPRRVSMQVVRMAGRELQALLGEPEAAVSPLLCLSQSGPPSFLQPVTVQLPLPS
Secondary structure 
SS confidence 
Disorder 
?????????
??
?
?????????
???????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  GITGLSLDRSRLHLLYWAPPAATWDDITAQVVLELTHLYARFQVTHFSWYWLWYTTKNCV
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  GGLARKAWERLRLHRVNLIALQRRRDPEQVLLQCLPRNKVDATLRRLLERYRGPEPSDTV
Secondary structure 
SS confidence 
Disorder 
???????
??
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  EMFEGEEFFAAFERGIDVDADRPDCVEGRICFVFYSHLKNVKEVYVTTTLDREAQAVRGQ
Secondary structure 
SS confidence 
Disorder 
????
??
?
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  VSFYRGAVPVRVPEEAEAARQRKGADALWMATLPIKLPRLRGSEGPRRGAGLSLAPLNLG
Secondary structure 
SS confidence 
Disorder 
?????????????????????
????????????
???????
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  DAETGFLTQSNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWA
Secondary structure 
SS confidence 
Disorder  ???????
?
???
?
?
?
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  ERQAGQPGAVGLLVQALEQSDRQDVAEEVRAVLELGRRKYQDSIRRMGLAPKDPALPGSS
Secondary structure 
SS confidence 
Disorder 
???????
?
??????
?
???????????????
Disorder confidence 
 
   .........910
Sequence  APQPPEPAQA
Secondary structure 
SS confidence 
Disorder  ??????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 4d8o chain A

3D model

Region: 323 - 866
Aligned: 481
Modelled: 498
Confidence: 100.0%
Identity: 27%
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of the ankyrin-b zu5-zu5-upa-dd tandem

Phyre2

PDB 3ud2 chain C

3D model

Region: 323 - 611
Aligned: 287
Modelled: 289
Confidence: 100.0%
Identity: 26%
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin

Phyre2

PDB 3g5b chain A

3D model

Region: 458 - 870
Aligned: 363
Modelled: 384
Confidence: 100.0%
Identity: 15%
PDB header:apoptosis
Chain: A: PDB Molecule:netrin receptor unc5b;
PDBTitle: the structure of unc5b cytoplasmic domain

Phyre2

PDB 3rgx chain A

3D model

Region: 28 - 306
Aligned: 265
Modelled: 261
Confidence: 100.0%
Identity: 54%
PDB header:transferase
Chain: A: PDB Molecule:protein brassinosteroid insensitive 1;
PDBTitle: structural insight into brassinosteroid perception by bri1

Phyre2

PDB 1ziw chain A

3D model

Region: 18 - 297
Aligned: 263
Modelled: 269
Confidence: 100.0%
Identity: 27%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: human toll-like receptor 3 extracellular domain structure

Phyre2

PDB 2a0z chain A

3D model

Region: 12 - 295
Aligned: 267
Modelled: 273
Confidence: 99.9%
Identity: 27%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain

Phyre2

PDB 3oja chain A

3D model

Region: 29 - 295
Aligned: 243
Modelled: 250
Confidence: 99.9%
Identity: 25%
PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 3oja chain B

3D model

Region: 32 - 294
Aligned: 248
Modelled: 250
Confidence: 99.9%
Identity: 25%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 2z64 chain A

3D model

Region: 23 - 297
Aligned: 258
Modelled: 271
Confidence: 99.9%
Identity: 25%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex

Phyre2

PDB 1m9s chain A

3D model

Region: 68 - 284
Aligned: 192
Modelled: 200
Confidence: 99.9%
Identity: 25%
PDB header:signaling protein
Chain: A: PDB Molecule:internalin b;
PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.

Phyre2

PDB 3fxi chain A

3D model

Region: 23 - 297
Aligned: 258
Modelled: 264
Confidence: 99.9%
Identity: 29%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex

Phyre2

PDB 3a79 chain B

3D model

Region: 104 - 297
Aligned: 190
Modelled: 194
Confidence: 99.9%
Identity: 53%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex

Phyre2

PDB 3a79 chain A

3D model

Region: 60 - 297
Aligned: 214
Modelled: 238
Confidence: 99.9%
Identity: 30%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex

Phyre2

PDB 1wwl chain A

3D model

Region: 36 - 277
Aligned: 230
Modelled: 235
Confidence: 99.9%
Identity: 23%
PDB header:immune system
Chain: A: PDB Molecule:monocyte differentiation antigen cd14;
PDBTitle: crystal structure of cd14

Phyre2

PDB 2z63 chain A

3D model

Region: 61 - 297
Aligned: 222
Modelled: 226
Confidence: 99.9%
Identity: 33%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61

Phyre2

PDB 2z7x chain B

3D model

Region: 42 - 276
Aligned: 214
Modelled: 224
Confidence: 99.9%
Identity: 32%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide

Phyre2

PDB 2omz chain A domain 2

3D model

Region: 110 - 293
Aligned: 178
Modelled: 184
Confidence: 99.9%
Identity: 25%
Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily: L domain-like
Family: Internalin LRR domain

Phyre2

PDB 3cvr chain A

3D model

Region: 89 - 296
Aligned: 175
Modelled: 186
Confidence: 99.9%
Identity: 33%
PDB header:ligase
Chain: A: PDB Molecule:invasion plasmid antigen;
PDBTitle: crystal structure of the full length ipah3

Phyre2

PDB 3g06 chain A

3D model

Region: 9 - 296
Aligned: 256
Modelled: 286
Confidence: 99.9%
Identity: 32%
PDB header:ligase
Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein);
PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase

Phyre2

PDB 2of5 chain K

3D model

Region: 777 - 876
Aligned: 100
Modelled: 100
Confidence: 99.9%
Identity: 99%
PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing
PDBTitle: oligomeric death domain complex

Phyre2

PDB 1ddf chain A

3D model

Region: 787 - 883
Aligned: 96
Modelled: 96
Confidence: 99.7%
Identity: 17%
Fold: DEATH domain
Superfamily: DEATH domain
Family: DEATH domain, DD

Phyre2

PDB 1n3k chain A

3D model

Region: 801 - 907
Aligned: 107
Modelled: 107
Confidence: 85.9%
Identity: 13%
Fold: DEATH domain
Superfamily: DEATH domain
Family: DEATH effector domain, DED

Phyre2
1
c4d8oA_
2
c3ud2C_
3
c3g5bA_
4
c3rgxA_
5
c1ziwA_
6
c2a0zA_
7
c3ojaA_
8
c3ojaB_
9
c2z64A_
10
c1m9sA_
11
c3fxiA_
12
c3a79B_
13
c3a79A_
14
c1wwlA_
15
c2z63A_
16
c2z7xB_
17
d2omza2
18
c3cvrA_
19
c3g06A_
20
c2of5K_
21
22
23
24
25
26
27
28
29
30
31
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d1ddfa_
45
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d1n3ka_
124
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4d8oA_
100.0 27 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of the ankyrin-b zu5-zu5-upa-dd tandem
2c3ud2C_
100.0 26 PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin
3c3g5bA_
100.0 15 PDB header:apoptosis
Chain: A: PDB Molecule:netrin receptor unc5b;
PDBTitle: the structure of unc5b cytoplasmic domain
4c3rgxA_
100.0 54 PDB header:transferase
Chain: A: PDB Molecule:protein brassinosteroid insensitive 1;
PDBTitle: structural insight into brassinosteroid perception by bri1
5c1ziwA_
100.0 27 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: human toll-like receptor 3 extracellular domain structure
6c2a0zA_
99.9 27 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain
7c3ojaA_
99.9 25 PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
8c3ojaB_
99.9 25 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
9c2z64A_
99.9 25 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex
10c1m9sA_
99.9 25 PDB header:signaling protein
Chain: A: PDB Molecule:internalin b;
PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
11c3fxiA_
99.9 29 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex
12c3a79B_
99.9 53 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
13c3a79A_
99.9 30 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
14c1wwlA_
99.9 23 PDB header:immune system
Chain: A: PDB Molecule:monocyte differentiation antigen cd14;
PDBTitle: crystal structure of cd14
15c2z63A_
99.9 33 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61
16c2z7xB_
99.9 32 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
17d2omza2
99.9 25 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
18c3cvrA_
99.9 33 PDB header:ligase
Chain: A: PDB Molecule:invasion plasmid antigen;
PDBTitle: crystal structure of the full length ipah3
19c3g06A_
99.9 32 PDB header:ligase
Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein);
PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
20c2of5K_
99.9 99 PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing
PDBTitle: oligomeric death domain complex
21c2id5D_
not modelled 99.9 25 PDB header:ligand binding protein,membrane protein
Chain: D: PDB Molecule:leucine rich repeat neuronal 6a;
PDBTitle: crystal structure of the lingo-1 ectodomain
22c2xotA_
not modelled 99.9 33 PDB header:cell adhesion
Chain: A: PDB Molecule:amphoterin-induced protein 1;
PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1
23c3f59A_
not modelled 99.9 27 PDB header:structural protein
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin
24c2z81A_
not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
25c3j0aB_
not modelled 99.9 26 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 5;
PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction
26c2ft3B_
not modelled 99.9 34 PDB header:structural protein, signaling protein
Chain: B: PDB Molecule:biglycan;
PDBTitle: crystal structure of the biglycan dimer core protein
27c2omwA_
not modelled 99.9 28 PDB header:cell invasion/cell adhesion
Chain: A: PDB Molecule:internalin-a;
PDBTitle: crystal structure of inla s192n y369s/mec1 complex
28c3rg1I_
not modelled 99.8 30 PDB header:immune system
Chain: I: PDB Molecule:cd180 molecule;
PDBTitle: crystal structure of the rp105/md-1 complex
29c3v47B_
not modelled 99.8 33 PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61
PDBTitle: crystal structure of the n-tetminal fragment of zebrafish tlr5 in2 complex with salmonella flagellin
30d1xkua_
not modelled 99.8 31 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
31c1xkuA_
not modelled 99.8 31 PDB header:structural protein
Chain: A: PDB Molecule:decorin;
PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan
32c1ltxA_
not modelled 99.8 23 PDB header:transferase/protein binding
Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
33c3v44A_
not modelled 99.8 28 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61
PDBTitle: crystal structure of the n-terminal fragment of zebrafish tlr5
34d1ogqa_
not modelled 99.8 26 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Polygalacturonase inhibiting protein PGIP
35c3o6nA_
not modelled 99.8 25 PDB header:protein binding
Chain: A: PDB Molecule:apl1;
PDBTitle: crystal structure of apl1 leucine-rich repeat domain
36c2yqfA_
not modelled 99.8 27 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: solution structure of the death domain of ankyrin-1
37c3e6jA_
not modelled 99.8 31 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor diversity region;
PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide
38c2o6sA_
not modelled 99.8 29 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59
39c3bz5A_
not modelled 99.8 29 PDB header:cell adhesion
Chain: A: PDB Molecule:internalin-j;
PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder
40d1p9ag_
not modelled 99.8 33 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
41c1g9uA_
not modelled 99.8 35 PDB header:toxin
Chain: A: PDB Molecule:outer protein yopm;
PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis
42d1jl5a_
not modelled 99.8 35 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Leucine rich effector protein YopM
43c1ookG_
not modelled 99.8 34 PDB header:hydrolase
Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor;
PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin
44d1ddfa_
99.7 17 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
45d1fada_
not modelled 99.7 25 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
46c1wxpA_
not modelled 99.7 22 PDB header:transport protein
Chain: A: PDB Molecule:tho complex subunit 1;
PDBTitle: solution structure of the death domain of nuclear matrix2 protein p84
47c2o6qA_
not modelled 99.7 27 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor a;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29
48d1icha_
not modelled 99.7 25 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
49c1ichA_
not modelled 99.7 25 PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor-1;
PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain
50c3oq9C_
not modelled 99.7 16 PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: structure of the fas/fadd death domain assembly
51c2gf5A_
not modelled 99.7 25 PDB header:apoptosis
Chain: A: PDB Molecule:fadd protein;
PDBTitle: structure of intact fadd (mort1)
52c2z80A_
not modelled 99.7 30 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
53d2gf5a1
not modelled 99.7 26 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
54c3rfsA_
not modelled 99.7 25 PDB header:protein binding
Chain: A: PDB Molecule:internalin b, repeat modules, variable lymphocyte receptor
PDBTitle: design of a binding scaffold based on variable lymphocyte receptors of2 jawless vertebrates by module engineering
55c3o53A_
not modelled 99.7 20 PDB header:protein binding
Chain: A: PDB Molecule:protein lrim1;
PDBTitle: crystal structure of lrim1 leucine-rich repeat domain
56c2of5A_
not modelled 99.7 20 PDB header:apoptosis
Chain: A: PDB Molecule:death domain-containing protein cradd;
PDBTitle: oligomeric death domain complex
57c3m18A_
not modelled 99.7 27 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region;
PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme
58d2omxa2
not modelled 99.7 25 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
59d2astb2
not modelled 99.7 20 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:Cyclin A/CDK2-associated p19, Skp2
60c1h6uA_
not modelled 99.7 23 PDB header:cell adhesion
Chain: A: PDB Molecule:internalin h;
PDBTitle: internalin h: crystal structure of fused n-terminal2 domains.
61d2bnha_
not modelled 99.6 32 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:28-residue LRR
62c2o6rA_
not modelled 99.6 32 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61
63c2v70D_
not modelled 99.6 28 PDB header:structural protein
Chain: D: PDB Molecule:slit homolog 2 protein n-product;
PDBTitle: third lrr domain of human slit2
64d1ozna_
not modelled 99.6 27 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
65c2v9sC_
not modelled 99.6 25 PDB header:structural protein
Chain: C: PDB Molecule:slit homolog 2 protein n-product;
PDBTitle: second lrr domain of human slit2
66c2ra8A_
not modelled 99.6 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr;
PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43
67c2je0E_
not modelled 99.6 27 PDB header:nuclear protein
Chain: E: PDB Molecule:acidic leucine-rich nuclear phosphoprotein 32 family
PDBTitle: crystal structure of pp32
68d1z7xw1
not modelled 99.6 43 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:28-residue LRR
69c2wfhB_
not modelled 99.6 33 PDB header:splicing
Chain: B: PDB Molecule:slit homolog 2 protein c-product;
PDBTitle: the human slit 2 dimerization domain d4
70c2z62A_
not modelled 99.6 24 PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61
71d1dcea3
not modelled 99.6 37 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
72c2z66A_
not modelled 99.6 27 PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4;
PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
73c2y5qA_
not modelled 99.6 24 PDB header:protein binding
Chain: A: PDB Molecule:internalin b;
PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392
74c1xeuA_
not modelled 99.6 28 PDB header:cell invasion
Chain: A: PDB Molecule:internalin c;
PDBTitle: crystal structure of internalin c from listeria2 monocytogenes
75c2r9uC_
not modelled 99.5 25 PDB header:immune system
Chain: C: PDB Molecule:variable lymphocyte receptor;
PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain
76d1w8aa_
not modelled 99.5 25 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
77d1h6ta2
not modelled 99.5 26 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
78c2uzyA_
not modelled 99.5 25 PDB header:signaling protein/receptor
Chain: A: PDB Molecule:internalin b;
PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii
79d1h6ua2
not modelled 99.5 24 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Internalin LRR domain
80d2ifga3
not modelled 99.5 23 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
81c3g3aA_
not modelled 99.5 24 PDB header:hydrolase/immune system
Chain: A: PDB Molecule:variable lymphocyte receptor vlrb.2d;
PDBTitle: structure of a lamprey variable lymphocyte receptor in2 complex with a protein antigen
82c1otnA_
not modelled 99.5 25 PDB header:cell adhesion
Chain: A: PDB Molecule:internalin b;
PDBTitle: calcium-binding mutant of the internalin b lrr domain
83c3g04C_
not modelled 99.5 16 PDB header:immune system
Chain: C: PDB Molecule:thyrotropin receptor;
PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody
84c2ib1A_
not modelled 99.5 23 PDB header:apoptosis
Chain: A: PDB Molecule:death domain containing membrane protein nradd;
PDBTitle: solution structure of p45 death domain
85c1k5dL_
not modelled 99.4 21 PDB header:signaling protein/signaling activator
Chain: L: PDB Molecule:ran gtpase activating protein 1;
PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex
86d1a9na_
not modelled 99.4 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:U2A'-like
87d1xwdc1
not modelled 99.4 21 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
88d2ca6a1
not modelled 99.4 21 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:Rna1p (RanGAP1), N-terminal domain
89c2ifgB_
not modelled 99.4 23 PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: structure of the extracellular segment of human trka in complex with2 nerve growth factor
90d1m9la_
not modelled 99.4 23 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:Outer arm dynein light chain 1
Family:Outer arm dynein light chain 1
91d1fs2a2
not modelled 99.3 23 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:Cyclin A/CDK2-associated p19, Skp2
92d1ngra_
not modelled 99.3 26 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
93c2p1nE_
not modelled 99.3 16 PDB header:signaling protein
Chain: E: PDB Molecule:transport inhibitor response 1 protein;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
94c3un9A_
not modelled 99.2 26 PDB header:immune system
Chain: A: PDB Molecule:nlr family member x1;
PDBTitle: crystal structure of an immune receptor
95c2kxsA_
not modelled 99.2 23 PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1, linker, peptide of myocardium-
PDBTitle: zo1 zu5 domain in complex with grinl1a peptide
96c3gozA_
not modelled 99.2 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:leucine-rich repeat-containing protein;
PDBTitle: crystal structure of the leucine-rich repeat-containing2 protein legl7 from legionella pneumophila. northeast3 structural genomics consortium target lgr148
97c2kxrA_
not modelled 99.2 24 PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: zo1 zu5 domain mc/aa mutation
98c3mopC_
not modelled 99.1 28 PDB header:signaling protein, immune system
Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88;
PDBTitle: the ternary death domain complex of myd88, irak4, and irak2
99c3oglD_
not modelled 99.0 16 PDB header:protein binding
Chain: D: PDB Molecule:coronatine-insensitive protein 1;
PDBTitle: structure of coi1-ask1 in complex with ja-isoleucine and the jaz12 degron
100c3ogmB_
not modelled 99.0 16 PDB header:protein binding
Chain: B: PDB Molecule:coronatine-insensitive protein 1;
PDBTitle: structure of coi1-ask1 in complex with coronatine and the jaz1 degron
101d1d2za_
not modelled 98.7 13 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
102c3sb4B_
not modelled 98.6 14 PDB header:protein binding
Chain: B: PDB Molecule:hypothetical leucine rich repeat protein;
PDBTitle: crystal structure of a hypothetical leucine rich repeat protein2 (bt_1240) from bacteroides thetaiotaomicron vpi-5482 at 1.99 a3 resolution
103c1kooD_
not modelled 98.6 27 PDB header:rna binding protein
Chain: D: PDB Molecule:tip associating protein;
PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor
104d1wmga_
not modelled 98.2 21 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
105d1koha1
not modelled 98.1 26 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:mRNA export factor tap
106d1io0a_
not modelled 98.1 18 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:28-residue LRR
107c1fqvK_
not modelled 98.0 22 PDB header:ligase
Chain: K: PDB Molecule:skp2;
PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex
108c1pgvA_
not modelled 98.0 19 PDB header:protein binding
Chain: A: PDB Molecule:tropomodulin tmd-1;
PDBTitle: structural genomics of caenorhabditis elegans: tropomodulin2 c-terminal domain
109d1pgva_
not modelled 98.0 19 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:RNI-like
Family:28-residue LRR
110c2d96A_
not modelled 97.9 23 PDB header:transcription
Chain: A: PDB Molecule:nuclear factor nf-kappa-b p100 subunit;
PDBTitle: solution structure of the death domain of nuclear factor nf-2 kappa-b p100
111c2dbfA_
not modelled 97.7 24 PDB header:signaling protein
Chain: A: PDB Molecule:nuclear factor nf-kappa-b p105 subunit;
PDBTitle: solution structure of the death domain in human nuclear2 factor nf-kappa-b p105 subunit
112c3rfeB_
not modelled 97.3 28 PDB header:cell adhesion
Chain: B: PDB Molecule:platelet glycoprotein ib beta chain;
PDBTitle: crystal structure of glycoprotein gpib ectodomain
113c3e2jA_
not modelled 97.3 18 PDB header:electron transport
Chain: A: PDB Molecule:atp synthase subunit s, mitochondrial;
PDBTitle: crystal structure of bovine coupling factor b
114d1wh4a_
not modelled 96.7 20 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
115c1rh1A_
not modelled 95.1 10 PDB header:antibiotic
Chain: A: PDB Molecule:colicin b;
PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution
116c3cl3A_
not modelled 93.7 16 PDB header:viral protein/signaling protein
Chain: A: PDB Molecule:orf k13;
PDBTitle: crystal structure of a vflip-ikkgamma complex: insights2 into viral activation of the ikk signalosome
117c3mopM_
not modelled 93.7 23 PDB header:signaling protein, immune system
Chain: M: PDB Molecule:interleukin-1 receptor-associated kinase-like 2;
PDBTitle: the ternary death domain complex of myd88, irak4, and irak2
118d1cy5a_
not modelled 93.6 12 Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
119d3ygsp_
not modelled 91.3 17 Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
120c2bbrA_
not modelled 91.2 12 PDB header:viral protein
Chain: A: PDB Molecule:viral casp8 and fadd-like apoptosis regulator;
PDBTitle: crystal structure of mc159 reveals molecular mechanism of2 disc assembly and vflip inhibition

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