Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	T	D	L	I	L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	D	I	D	Q	L	I	S	S	K	H	L	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?		?	?	?																		?				?																?	?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F
Secondary structure
SS confidence
Disorder								?		?	?		?	?	?	?	?	?	?				?		?																		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A
Secondary structure
SS confidence
Disorder					?	?	?	?	?													?				?					?																		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T
Secondary structure
SS confidence
Disorder										?	?	?	?	?													?			?	?	?	?	?	?																?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T
Secondary structure
SS confidence
Disorder													?																									?			?	?														?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Sequence		N	N	T	S	D	I	G	T	L	F	P	I	I	K	Q	S	K	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ft3 chain B Region: 8 - 309 Aligned: 284 Modelled: 284 Confidence: 100.0% Identity: 13% PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein Phyre2 PDB 3oja chain B Region: 2 - 310 Aligned: 282 Modelled: 283 Confidence: 100.0% Identity: 15% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 2omz chain A domain 2 Region: 1 - 309 Aligned: 303 Modelled: 309 Confidence: 100.0% Identity: 14% Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily: L domain-like Family: Internalin LRR domain Phyre2 PDB 1xku chain A Region: 12 - 309 Aligned: 281 Modelled: 281 Confidence: 100.0% Identity: 15% PDB header:structural protein Chain: A: PDB Molecule:decorin; PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan Phyre2 PDB 1xku chain A Region: 12 - 309 Aligned: 281 Modelled: 281 Confidence: 100.0% Identity: 15% Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily: L domain-like Family: Ngr ectodomain-like Phyre2 PDB 2id5 chain D Region: 2 - 309 Aligned: 272 Modelled: 272 Confidence: 100.0% Identity: 13% PDB header:ligand binding protein,membrane protein Chain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain Phyre2 PDB 2z63 chain A Region: 2 - 309 Aligned: 308 Modelled: 308 Confidence: 100.0% Identity: 14% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61 Phyre2 PDB 2omw chain A Region: 7 - 307 Aligned: 297 Modelled: 301 Confidence: 100.0% Identity: 15% PDB header:cell invasion/cell adhesion Chain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex Phyre2 PDB 2z64 chain A Region: 2 - 309 Aligned: 308 Modelled: 308 Confidence: 100.0% Identity: 16% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex Phyre2 PDB 3o6n chain A Region: 7 - 310 Aligned: 301 Modelled: 304 Confidence: 100.0% Identity: 15% PDB header:protein binding Chain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain Phyre2 PDB 3fxi chain A Region: 2 - 309 Aligned: 308 Modelled: 308 Confidence: 99.9% Identity: 15% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex Phyre2 PDB 1ziw chain A Region: 2 - 309 Aligned: 308 Modelled: 308 Confidence: 99.9% Identity: 17% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: human toll-like receptor 3 extracellular domain structure Phyre2 PDB 3rg1 chain I Region: 2 - 309 Aligned: 305 Modelled: 308 Confidence: 99.9% Identity: 11% PDB header:immune system Chain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex Phyre2 PDB 3a79 chain A Region: 2 - 309 Aligned: 303 Modelled: 306 Confidence: 99.9% Identity: 16% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex Phyre2 PDB 2a0z chain A Region: 2 - 309 Aligned: 308 Modelled: 308 Confidence: 99.9% Identity: 18% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain Phyre2 PDB 2z7x chain B Region: 2 - 296 Aligned: 293 Modelled: 295 Confidence: 99.9% Identity: 18% PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide Phyre2 PDB 3a79 chain B Region: 2 - 309 Aligned: 307 Modelled: 308 Confidence: 99.9% Identity: 15% PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex Phyre2 PDB 3rgx chain A Region: 2 - 309 Aligned: 307 Modelled: 308 Confidence: 99.9% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:protein brassinosteroid insensitive 1; PDBTitle: structural insight into brassinosteroid perception by bri1 Phyre2 PDB 2z81 chain A Region: 2 - 309 Aligned: 303 Modelled: 301 Confidence: 99.9% Identity: 16% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide Phyre2 PDB 2z80 chain A Region: 9 - 296 Aligned: 279 Modelled: 288 Confidence: 99.9% Identity: 15% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide Phyre2 1 c2ft3B_ 2 c3ojaB_ 3 d2omza2 4 c1xkuA_ 5 d1xkua_ 6 c2id5D_ 7 c2z63A_ 8 c2omwA_ 9 c2z64A_ 10 c3o6nA_ 11 c3fxiA_ 12 c1ziwA_ 13 c3rg1I_ 14 c3a79A_ 15 c2a0zA_ 16 c2z7xB_ 17 c3a79B_ 18 c3rgxA_ 19 c2z81A_ 20 c2z80A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ft3B_ 100.0 13 PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein 2 c3ojaB_ 100.0 15 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 3 d2omza2 100.0 14 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 4 c1xkuA_ 100.0 15 PDB header:structural protein Chain: A: PDB Molecule:decorin; PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan 5 d1xkua_ 100.0 15 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 6 c2id5D_ 100.0 13 PDB header:ligand binding protein,membrane protein Chain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain 7 c2z63A_ 100.0 14 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61 8 c2omwA_ 100.0 15 PDB header:cell invasion/cell adhesion Chain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex 9 c2z64A_ 100.0 16 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex 10 c3o6nA_ 100.0 15 PDB header:protein binding Chain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain 11 c3fxiA_ 99.9 15 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex 12 c1ziwA_ 99.9 17 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: human toll-like receptor 3 extracellular domain structure 13 c3rg1I_ 99.9 11 PDB header:immune system Chain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex 14 c3a79A_ 99.9 16 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex 15 c2a0zA_ 99.9 18 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain 16 c2z7xB_ 99.9 18 PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide 17 c3a79B_ 99.9 15 PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex 18 c3rgxA_ 99.9 21 PDB header:transferase Chain: A: PDB Molecule:protein brassinosteroid insensitive 1; PDBTitle: structural insight into brassinosteroid perception by bri1 19 c2z81A_ 99.9 16 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide 20 c2z80A_ 99.9 15 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide 21 c1g9uA_ not modelled 99.9 13 PDB header:toxin Chain: A: PDB Molecule:outer protein yopm; PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis 22 d1jl5a_ not modelled 99.9 13 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Leucine rich effector protein YopM 23 c3bz5A_ not modelled 99.9 13 PDB header:cell adhesion Chain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder 24 c3j0aB_ not modelled 99.9 15 PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 5; PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction 25 d1ogqa_ not modelled 99.9 13 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Polygalacturonase inhibiting protein PGIP 26 d1p9ag_ not modelled 99.9 19 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 27 c2z62A_ not modelled 99.9 14 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61 28 c2o6qA_ not modelled 99.9 19 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29 29 c3m18A_ not modelled 99.8 16 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region; PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme 30 c3o53A_ not modelled 99.8 16 PDB header:protein binding Chain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain 31 d1xwdc1 not modelled 99.8 11 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 32 c1ookG_ not modelled 99.8 15 PDB header:hydrolase Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor; PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin 33 c3ojaA_ not modelled 99.8 16 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 34 c3g04C_ not modelled 99.8 17 PDB header:immune system Chain: C: PDB Molecule:thyrotropin receptor; PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody 35 d2bnha_ not modelled 99.8 10 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 36 c1m9sA_ not modelled 99.8 15 PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains. 37 d1ozna_ not modelled 99.8 12 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 38 c3e6jA_ not modelled 99.8 23 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor diversity region; PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide 39 c1h6uA_ not modelled 99.8 14 PDB header:cell adhesion Chain: A: PDB Molecule:internalin h; PDBTitle: internalin h: crystal structure of fused n-terminal2 domains. 40 c3g06A_ not modelled 99.8 16 PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase 41 c1ltxA_ not modelled 99.8 27 PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 42 c2y5qA_ not modelled 99.8 23 PDB header:protein binding Chain: A: PDB Molecule:internalin b; PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392 43 c2o6sA_ not modelled 99.8 21 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59 44 d1z7xw1 not modelled 99.8 7 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 45 d1h6ua2 not modelled 99.8 18 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 46 c1otnA_ not modelled 99.7 10 PDB header:cell adhesion Chain: A: PDB Molecule:internalin b; PDBTitle: calcium-binding mutant of the internalin b lrr domain 47 c3cvrA_ not modelled 99.7 24 PDB header:ligase Chain: A: PDB Molecule:invasion plasmid antigen; PDBTitle: crystal structure of the full length ipah3 48 c2z66A_ not modelled 99.7 14 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61 49 c2xotA_ not modelled 99.7 20 PDB header:cell adhesion Chain: A: PDB Molecule:amphoterin-induced protein 1; PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1 50 c2uzyA_ not modelled 99.7 18 PDB header:signaling protein/receptor Chain: A: PDB Molecule:internalin b; PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii 51 d2ca6a1 not modelled 99.7 10 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Rna1p (RanGAP1), N-terminal domain 52 c1k5dL_ not modelled 99.7 9 PDB header:signaling protein/signaling activator Chain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex 53 d1h6ta2 not modelled 99.7 21 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 54 c1xeuA_ not modelled 99.7 23 PDB header:cell invasion Chain: A: PDB Molecule:internalin c; PDBTitle: crystal structure of internalin c from listeria2 monocytogenes 55 d2omxa2 not modelled 99.6 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 56 c3gozA_ not modelled 99.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:leucine-rich repeat-containing protein; PDBTitle: crystal structure of the leucine-rich repeat-containing2 protein legl7 from legionella pneumophila. northeast3 structural genomics consortium target lgr148 57 c2r9uC_ not modelled 99.6 22 PDB header:immune system Chain: C: PDB Molecule:variable lymphocyte receptor; PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain 58 c1wwlA_ not modelled 99.6 18 PDB header:immune system Chain: A: PDB Molecule:monocyte differentiation antigen cd14; PDBTitle: crystal structure of cd14 59 c2v9sC_ not modelled 99.5 16 PDB header:structural protein Chain: C: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: second lrr domain of human slit2 60 c2o6rA_ not modelled 99.5 37 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61 61 c2v70D_ not modelled 99.5 17 PDB header:structural protein Chain: D: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: third lrr domain of human slit2 62 c2wfhB_ not modelled 99.5 15 PDB header:splicing Chain: B: PDB Molecule:slit homolog 2 protein c-product; PDBTitle: the human slit 2 dimerization domain d4 63 d1w8aa_ not modelled 99.5 21 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 64 c2ifgB_ not modelled 99.4 18 PDB header:transferase Chain: B: PDB Molecule:high affinity nerve growth factor receptor; PDBTitle: structure of the extracellular segment of human trka in complex with2 nerve growth factor 65 d2astb2 not modelled 99.4 16 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Cyclin A/CDK2-associated p19, Skp2 66 c3g3aA_ not modelled 99.4 22 PDB header:hydrolase/immune system Chain: A: PDB Molecule:variable lymphocyte receptor vlrb.2d; PDBTitle: structure of a lamprey variable lymphocyte receptor in2 complex with a protein antigen 67 d1dcea3 not modelled 99.4 42 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Rab geranylgeranyltransferase alpha-subunit, C-terminal domain 68 c2je0E_ not modelled 99.3 21 PDB header:nuclear protein Chain: E: PDB Molecule:acidic leucine-rich nuclear phosphoprotein 32 family PDBTitle: crystal structure of pp32 69 d1fs2a2 not modelled 99.2 20 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Cyclin A/CDK2-associated p19, Skp2 70 c2ra8A_ not modelled 99.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr; PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43 71 c3sb4B_ not modelled 99.0 12 PDB header:protein binding Chain: B: PDB Molecule:hypothetical leucine rich repeat protein; PDBTitle: crystal structure of a hypothetical leucine rich repeat protein2 (bt_1240) from bacteroides thetaiotaomicron vpi-5482 at 1.99 a3 resolution 72 d1a9na_ not modelled 99.0 16 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:U2A'-like 73 d2ifga3 not modelled 99.0 18 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 74 d1m9la_ not modelled 98.5 19 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:Outer arm dynein light chain 1 Family:Outer arm dynein light chain 1 75 c3rfeB_ not modelled 98.3 16 PDB header:cell adhesion Chain: B: PDB Molecule:platelet glycoprotein ib beta chain; PDBTitle: crystal structure of glycoprotein gpib ectodomain 76 c3oglD_ not modelled 98.2 9 PDB header:protein binding Chain: D: PDB Molecule:coronatine-insensitive protein 1; PDBTitle: structure of coi1-ask1 in complex with ja-isoleucine and the jaz12 degron 77 c3ogmB_ not modelled 98.2 9 PDB header:protein binding Chain: B: PDB Molecule:coronatine-insensitive protein 1; PDBTitle: structure of coi1-ask1 in complex with coronatine and the jaz1 degron 78 c1kooD_ not modelled 98.2 20 PDB header:rna binding protein Chain: D: PDB Molecule:tip associating protein; PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor 79 c2p1nE_ not modelled 98.0 8 PDB header:signaling protein Chain: E: PDB Molecule:transport inhibitor response 1 protein; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 80 d1koha1 not modelled 97.9 20 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:mRNA export factor tap 81 c1fqvK_ not modelled 97.3 15 PDB header:ligase Chain: K: PDB Molecule:skp2; PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex 82 c3e2jA_ not modelled 97.3 14 PDB header:electron transport Chain: A: PDB Molecule:atp synthase subunit s, mitochondrial; PDBTitle: crystal structure of bovine coupling factor b 83 d1io0a_ not modelled 95.7 18 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 84 d1pgva_ not modelled 95.5 12 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0