Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	I	A	L	V	R	L	F	K	C	V	E	L	H	N	S	K	L	D	L	T	D	L	H	L	G	S	L	P	P	L	P	S	W	I	E	V	L	Y	L	R	H	N	G	L	A	T	I	Q	I	P	K	F	C	K	E	L	E	L
Secondary structure
SS confidence
Disorder		?	?	?											?												?					?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	F	N	N	Y	M	V	F	P	K	V	S	D	G	I	T	Q	V	S	V	D	N	N	L	I	S	R	V	D	S	S	P	S	K	A	M	T	I	S	I	Y	R	N	K	I	W	X	I	P	A	M	P	E	T	T	K	L	F	N	C
Secondary structure
SS confidence
Disorder										?	?	?	?	?															?	?	?	?	?	?																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Sequence		G	D	N	K	I	K	E	I	Q	Y	F	P	N	H	L	E	K	A	R	M	E	C	D	I	E	V	V	S	A	I	Y	S	N	K	E	L	L	F	K	E	C	N	S	F	E	E	T	F	L	Y	H	G	L
Secondary structure
SS confidence
Disorder											?	?							?																?	?		?	?	?	?							?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3g06 chain A Region: 2 - 172 Aligned: 162 Modelled: 162 Confidence: 99.9% Identity: 21% PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase Phyre2 PDB 3cvr chain A Region: 2 - 172 Aligned: 171 Modelled: 169 Confidence: 99.9% Identity: 22% PDB header:ligase Chain: A: PDB Molecule:invasion plasmid antigen; PDBTitle: crystal structure of the full length ipah3 Phyre2 PDB 1jl5 chain A Region: 2 - 139 Aligned: 138 Modelled: 138 Confidence: 99.9% Identity: 57% Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily: L domain-like Family: Leucine rich effector protein YopM Phyre2 PDB 1g9u chain A Region: 2 - 167 Aligned: 154 Modelled: 154 Confidence: 99.9% Identity: 34% PDB header:toxin Chain: A: PDB Molecule:outer protein yopm; PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis Phyre2 PDB 1m9s chain A Region: 14 - 172 Aligned: 149 Modelled: 149 Confidence: 99.8% Identity: 19% PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains. Phyre2 PDB 3a79 chain B Region: 17 - 132 Aligned: 116 Modelled: 116 Confidence: 99.7% Identity: 17% PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex Phyre2 PDB 1wwl chain A Region: 15 - 158 Aligned: 134 Modelled: 134 Confidence: 99.7% Identity: 13% PDB header:immune system Chain: A: PDB Molecule:monocyte differentiation antigen cd14; PDBTitle: crystal structure of cd14 Phyre2 PDB 2a0z chain A Region: 16 - 157 Aligned: 134 Modelled: 134 Confidence: 99.7% Identity: 18% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain Phyre2 PDB 1ziw chain A Region: 16 - 173 Aligned: 150 Modelled: 150 Confidence: 99.7% Identity: 17% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: human toll-like receptor 3 extracellular domain structure Phyre2 PDB 2z64 chain A Region: 17 - 172 Aligned: 133 Modelled: 133 Confidence: 99.7% Identity: 14% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex Phyre2 PDB 3j0a chain B Region: 17 - 157 Aligned: 120 Modelled: 120 Confidence: 99.6% Identity: 10% PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 5; PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction Phyre2 PDB 3fxi chain A Region: 17 - 157 Aligned: 118 Modelled: 118 Confidence: 99.6% Identity: 13% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex Phyre2 PDB 2z7x chain B Region: 18 - 132 Aligned: 115 Modelled: 115 Confidence: 99.6% Identity: 12% PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide Phyre2 PDB 2o6r chain A Region: 16 - 170 Aligned: 132 Modelled: 132 Confidence: 99.6% Identity: 17% PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61 Phyre2 PDB 1ook chain G Region: 15 - 170 Aligned: 146 Modelled: 146 Confidence: 99.6% Identity: 21% PDB header:hydrolase Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor; PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin Phyre2 PDB 3e6j chain A Region: 17 - 170 Aligned: 146 Modelled: 146 Confidence: 99.6% Identity: 18% PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor diversity region; PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide Phyre2 PDB 2ft3 chain B Region: 15 - 169 Aligned: 153 Modelled: 153 Confidence: 99.6% Identity: 19% PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein Phyre2 PDB 2o6s chain A Region: 16 - 168 Aligned: 145 Modelled: 145 Confidence: 99.6% Identity: 14% PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59 Phyre2 PDB 2z63 chain A Region: 17 - 172 Aligned: 141 Modelled: 141 Confidence: 99.6% Identity: 14% PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61 Phyre2 PDB 3oja chain A Region: 15 - 172 Aligned: 151 Modelled: 151 Confidence: 99.6% Identity: 15% PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 1 c3g06A_ 2 c3cvrA_ 3 d1jl5a_ 4 c1g9uA_ 5 c1m9sA_ 6 c3a79B_ 7 c1wwlA_ 8 c2a0zA_ 9 c1ziwA_ 10 c2z64A_ 11 c3j0aB_ 12 c3fxiA_ 13 c2z7xB_ 14 c2o6rA_ 15 c1ookG_ 16 c3e6jA_ 17 c2ft3B_ 18 c2o6sA_ 19 c2z63A_ 20 c3ojaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3g06A_ 99.9 21 PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase 2 c3cvrA_ 99.9 22 PDB header:ligase Chain: A: PDB Molecule:invasion plasmid antigen; PDBTitle: crystal structure of the full length ipah3 3 d1jl5a_ 99.9 57 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Leucine rich effector protein YopM 4 c1g9uA_ 99.9 34 PDB header:toxin Chain: A: PDB Molecule:outer protein yopm; PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis 5 c1m9sA_ 99.8 19 PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains. 6 c3a79B_ 99.7 17 PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex 7 c1wwlA_ 99.7 13 PDB header:immune system Chain: A: PDB Molecule:monocyte differentiation antigen cd14; PDBTitle: crystal structure of cd14 8 c2a0zA_ 99.7 18 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain 9 c1ziwA_ 99.7 17 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: human toll-like receptor 3 extracellular domain structure 10 c2z64A_ 99.7 14 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex 11 c3j0aB_ 99.6 10 PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 5; PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction 12 c3fxiA_ 99.6 13 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex 13 c2z7xB_ 99.6 12 PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide 14 c2o6rA_ 99.6 17 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61 15 c1ookG_ 99.6 21 PDB header:hydrolase Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor; PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin 16 c3e6jA_ 99.6 18 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor diversity region; PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide 17 c2ft3B_ 99.6 19 PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein 18 c2o6sA_ 99.6 14 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59 19 c2z63A_ 99.6 14 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61 20 c3ojaA_ 99.6 15 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 21 d1p9ag_ not modelled 99.6 20 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 22 c2xotA_ not modelled 99.5 18 PDB header:cell adhesion Chain: A: PDB Molecule:amphoterin-induced protein 1; PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1 23 c3a79A_ not modelled 99.5 16 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex 24 c2z81A_ not modelled 99.5 16 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide 25 c2r9uC_ not modelled 99.5 15 PDB header:immune system Chain: C: PDB Molecule:variable lymphocyte receptor; PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain 26 c1ltxA_ not modelled 99.5 17 PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 27 d1xkua_ not modelled 99.5 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 28 c1xkuA_ not modelled 99.5 22 PDB header:structural protein Chain: A: PDB Molecule:decorin; PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan 29 c2wfhB_ not modelled 99.5 22 PDB header:splicing Chain: B: PDB Molecule:slit homolog 2 protein c-product; PDBTitle: the human slit 2 dimerization domain d4 30 d2omza2 not modelled 99.4 50 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 31 c2v70D_ not modelled 99.4 14 PDB header:structural protein Chain: D: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: third lrr domain of human slit2 32 c3rgxA_ not modelled 99.4 21 PDB header:transferase Chain: A: PDB Molecule:protein brassinosteroid insensitive 1; PDBTitle: structural insight into brassinosteroid perception by bri1 33 c2v9sC_ not modelled 99.4 18 PDB header:structural protein Chain: C: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: second lrr domain of human slit2 34 c2o6qA_ not modelled 99.4 18 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29 35 d1w8aa_ not modelled 99.4 19 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 36 c3g3aA_ not modelled 99.3 21 PDB header:hydrolase/immune system Chain: A: PDB Molecule:variable lymphocyte receptor vlrb.2d; PDBTitle: structure of a lamprey variable lymphocyte receptor in2 complex with a protein antigen 37 c2id5D_ not modelled 99.3 17 PDB header:ligand binding protein,membrane protein Chain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain 38 c3rg1I_ not modelled 99.3 19 PDB header:immune system Chain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex 39 c2z80A_ not modelled 99.3 23 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide 40 d1dcea3 not modelled 99.2 18 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Rab geranylgeranyltransferase alpha-subunit, C-terminal domain 41 c3m18A_ not modelled 99.2 19 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region; PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme 42 d1ozna_ not modelled 99.2 14 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 43 c3ojaB_ not modelled 99.2 8 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 44 c2z62A_ not modelled 99.2 21 PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61 45 c2je0E_ not modelled 99.1 17 PDB header:nuclear protein Chain: E: PDB Molecule:acidic leucine-rich nuclear phosphoprotein 32 family PDBTitle: crystal structure of pp32 46 c3bz5A_ not modelled 99.0 17 PDB header:cell adhesion Chain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder 47 d2omxa2 not modelled 99.0 20 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 48 c1xeuA_ not modelled 99.0 14 PDB header:cell invasion Chain: A: PDB Molecule:internalin c; PDBTitle: crystal structure of internalin c from listeria2 monocytogenes 49 c1h6uA_ not modelled 99.0 25 PDB header:cell adhesion Chain: A: PDB Molecule:internalin h; PDBTitle: internalin h: crystal structure of fused n-terminal2 domains. 50 c3g04C_ not modelled 99.0 21 PDB header:immune system Chain: C: PDB Molecule:thyrotropin receptor; PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody 51 c3o6nA_ not modelled 99.0 25 PDB header:protein binding Chain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain 52 d1ogqa_ not modelled 98.9 26 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Polygalacturonase inhibiting protein PGIP 53 c2y5qA_ not modelled 98.9 25 PDB header:protein binding Chain: A: PDB Molecule:internalin b; PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392 54 c1otnA_ not modelled 98.9 26 PDB header:cell adhesion Chain: A: PDB Molecule:internalin b; PDBTitle: calcium-binding mutant of the internalin b lrr domain 55 d1xwdc1 not modelled 98.9 32 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 56 d1a9na_ not modelled 98.8 16 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:U2A'-like 57 d1h6ta2 not modelled 98.8 22 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 58 d1h6ua2 not modelled 98.8 23 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain 59 c2ifgB_ not modelled 98.8 14 PDB header:transferase Chain: B: PDB Molecule:high affinity nerve growth factor receptor; PDBTitle: structure of the extracellular segment of human trka in complex with2 nerve growth factor 60 c3o53A_ not modelled 98.8 27 PDB header:protein binding Chain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain 61 c2uzyA_ not modelled 98.8 19 PDB header:signaling protein/receptor Chain: A: PDB Molecule:internalin b; PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii 62 d2ifga3 not modelled 98.8 12 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like 63 c2z66A_ not modelled 98.7 16 PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61 64 c2omwA_ not modelled 98.5 16 PDB header:cell invasion/cell adhesion Chain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex 65 c1kooD_ not modelled 98.1 9 PDB header:rna binding protein Chain: D: PDB Molecule:tip associating protein; PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor 66 c3gozA_ not modelled 98.0 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:leucine-rich repeat-containing protein; PDBTitle: crystal structure of the leucine-rich repeat-containing2 protein legl7 from legionella pneumophila. northeast3 structural genomics consortium target lgr148 67 d1m9la_ not modelled 97.9 18 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:Outer arm dynein light chain 1 Family:Outer arm dynein light chain 1 68 d1z7xw1 not modelled 97.8 16 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 69 c2ra8A_ not modelled 97.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr; PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43 70 d1koha1 not modelled 97.6 9 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:mRNA export factor tap 71 d2bnha_ not modelled 97.3 7 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 72 d2ca6a1 not modelled 97.0 7 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Rna1p (RanGAP1), N-terminal domain 73 c3rfeB_ not modelled 96.9 12 PDB header:cell adhesion Chain: B: PDB Molecule:platelet glycoprotein ib beta chain; PDBTitle: crystal structure of glycoprotein gpib ectodomain 74 c1k5dL_ not modelled 96.8 8 PDB header:signaling protein/signaling activator Chain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex 75 d2astb2 not modelled 95.0 6 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Cyclin A/CDK2-associated p19, Skp2 76 c3oglD_ not modelled 93.2 10 PDB header:protein binding Chain: D: PDB Molecule:coronatine-insensitive protein 1; PDBTitle: structure of coi1-ask1 in complex with ja-isoleucine and the jaz12 degron 77 c3ogmB_ not modelled 93.0 10 PDB header:protein binding Chain: B: PDB Molecule:coronatine-insensitive protein 1; PDBTitle: structure of coi1-ask1 in complex with coronatine and the jaz1 degron 78 c3e2jA_ not modelled 92.7 8 PDB header:electron transport Chain: A: PDB Molecule:atp synthase subunit s, mitochondrial; PDBTitle: crystal structure of bovine coupling factor b 79 c2p1nE_ not modelled 91.8 10 PDB header:signaling protein Chain: E: PDB Molecule:transport inhibitor response 1 protein; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 80 d1fs2a2 not modelled 89.9 9 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Cyclin A/CDK2-associated p19, Skp2 81 c1pgvA_ not modelled 82.8 9 PDB header:protein binding Chain: A: PDB Molecule:tropomodulin tmd-1; PDBTitle: structural genomics of caenorhabditis elegans: tropomodulin2 c-terminal domain 82 d1pgva_ not modelled 82.8 9 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 83 d1io0a_ not modelled 75.1 8 Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR 84 c1fqvK_ not modelled 15.3 9 PDB header:ligase Chain: K: PDB Molecule:skp2; PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0