Phyre 2 Results for P76321

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Email | l.a.kelley@imperial.ac.uk
Description | P76321
Date | Thu Jan 5 12:21:47 GMT 2012
Unique Job ID | c3753b9c3cbe846c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3g06A_
Top template information
PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
Confidence and coverage
Confidence: | 99.9% | Coverage: | 94%
162 residues ( 94% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | D | I | A | L | V | R | L | F | K | C | V | E | L | H | N | S | K | L | D | L | T | D | L | H | L | G | S | L | P | P | L | P | S | W | I | E | V | L | Y | L | R | H | N | G | L | A | T | I | Q | I | P | K | F | C | K | E | L | E | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | F | N | N | Y | M | V | F | P | K | V | S | D | G | I | T | Q | V | S | V | D | N | N | L | I | S | R | V | D | S | S | P | S | K | A | M | T | I | S | I | Y | R | N | K | I | W | X | I | P | A | M | P | E | T | T | K | L | F | N | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | .
Sequence |  | G | D | N | K | I | K | E | I | Q | Y | F | P | N | H | L | E | K | A | R | M | E | C | D | I | E | V | V | S | A | I | Y | S | N | K | E | L | L | F | K | E | C | N | S | F | E | E | T | F | L | Y | H | G | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3g06A_ |

### PDB 3g06 chain A

Region: 2 - 172
Aligned: 162
Modelled: 162
Confidence: 99.9%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein);
PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase

Phyre2
2 |
| c3cvrA_ |

### PDB 3cvr chain A

Region: 2 - 172
Aligned: 171
Modelled: 169
Confidence: 99.9%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:invasion plasmid antigen;
PDBTitle: crystal structure of the full length ipah3

Phyre2
3 |
| d1jl5a_ |

### PDB 1jl5 chain A

Region: 2 - 139
Aligned: 138
Modelled: 138
Confidence: 99.9%
Identity: 57%
Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily: L domain-like
Family: Leucine rich effector protein YopM

Phyre2
4 |
| c1g9uA_ |

### PDB 1g9u chain A

Region: 2 - 167
Aligned: 154
Modelled: 154
Confidence: 99.9%
Identity: 34%
PDB header:toxin
Chain: A: PDB Molecule:outer protein yopm;
PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis

Phyre2
5 |
| c1m9sA_ |

### PDB 1m9s chain A

Region: 14 - 172
Aligned: 149
Modelled: 149
Confidence: 99.8%
Identity: 19%
PDB header:signaling protein
Chain: A: PDB Molecule:internalin b;
PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.

Phyre2
6 |
| c3a79B_ |

### PDB 3a79 chain B

Region: 17 - 132
Aligned: 116
Modelled: 116
Confidence: 99.7%
Identity: 17%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b;
PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex

Phyre2
7 |
| c1wwlA_ |

### PDB 1wwl chain A

Region: 15 - 158
Aligned: 134
Modelled: 134
Confidence: 99.7%
Identity: 13%
PDB header:immune system
Chain: A: PDB Molecule:monocyte differentiation antigen cd14;
PDBTitle: crystal structure of cd14

Phyre2
8 |
| c2a0zA_ |

### PDB 2a0z chain A

Region: 16 - 157
Aligned: 134
Modelled: 134
Confidence: 99.7%
Identity: 18%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain

Phyre2
9 |
| c1ziwA_ |

### PDB 1ziw chain A

Region: 16 - 173
Aligned: 150
Modelled: 150
Confidence: 99.7%
Identity: 17%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: human toll-like receptor 3 extracellular domain structure

Phyre2
10 |
| c2z64A_ |

### PDB 2z64 chain A

Region: 17 - 172
Aligned: 133
Modelled: 133
Confidence: 99.7%
Identity: 14%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex

Phyre2
11 |
| c3j0aB_ |

### PDB 3j0a chain B

Region: 17 - 157
Aligned: 120
Modelled: 120
Confidence: 99.6%
Identity: 10%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 5;
PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction

Phyre2
12 |
| c3fxiA_ |

### PDB 3fxi chain A

Region: 17 - 157
Aligned: 118
Modelled: 118
Confidence: 99.6%
Identity: 13%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex

Phyre2
13 |
| c2z7xB_ |

### PDB 2z7x chain B

Region: 18 - 132
Aligned: 115
Modelled: 115
Confidence: 99.6%
Identity: 12%
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide

Phyre2
14 |
| c2o6rA_ |

### PDB 2o6r chain A

Region: 16 - 170
Aligned: 132
Modelled: 132
Confidence: 99.6%
Identity: 17%
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61

Phyre2
15 |
| c1ookG_ |

### PDB 1ook chain G

Region: 15 - 170
Aligned: 146
Modelled: 146
Confidence: 99.6%
Identity: 21%
PDB header:hydrolase
Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor;
PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin

Phyre2
16 |
| c3e6jA_ |

### PDB 3e6j chain A

Region: 17 - 170
Aligned: 146
Modelled: 146
Confidence: 99.6%
Identity: 18%
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor diversity region;
PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide

Phyre2
17 |
| c2ft3B_ |

### PDB 2ft3 chain B

Region: 15 - 169
Aligned: 153
Modelled: 153
Confidence: 99.6%
Identity: 19%
PDB header:structural protein, signaling protein
Chain: B: PDB Molecule:biglycan;
PDBTitle: crystal structure of the biglycan dimer core protein

Phyre2
18 |
| c2o6sA_ |

### PDB 2o6s chain A

Region: 16 - 168
Aligned: 145
Modelled: 145
Confidence: 99.6%
Identity: 14%
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59

Phyre2
19 |
| c2z63A_ |

### PDB 2z63 chain A

Region: 17 - 172
Aligned: 141
Modelled: 141
Confidence: 99.6%
Identity: 14%
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b;
PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61

Phyre2
20 |
| c3ojaA_ |

### PDB 3oja chain A

Region: 15 - 172
Aligned: 151
Modelled: 151
Confidence: 99.6%
Identity: 15%
PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3g06A_ |
|  | 99.9 | 21 | PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
2 | c3cvrA_ |
|  | 99.9 | 22 | PDB header:ligase Chain: A: PDB Molecule:invasion plasmid antigen; PDBTitle: crystal structure of the full length ipah3
3 | d1jl5a_ |
|  | 99.9 | 57 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Leucine rich effector protein YopM
4 | c1g9uA_ |
|  | 99.9 | 34 | PDB header:toxin Chain: A: PDB Molecule:outer protein yopm; PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis
5 | c1m9sA_ |
|  | 99.8 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
6 | c3a79B_ |
|  | 99.7 | 17 | PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
7 | c1wwlA_ |
|  | 99.7 | 13 | PDB header:immune system Chain: A: PDB Molecule:monocyte differentiation antigen cd14; PDBTitle: crystal structure of cd14
8 | c2a0zA_ |
|  | 99.7 | 18 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain
9 | c1ziwA_ |
|  | 99.7 | 17 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 3; PDBTitle: human toll-like receptor 3 extracellular domain structure
10 | c2z64A_ |
|  | 99.7 | 14 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex
11 | c3j0aB_ |
|  | 99.6 | 10 | PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 5; PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction
12 | c3fxiA_ |
|  | 99.6 | 13 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4; PDBTitle: crystal structure of the human tlr4-human md-2-e.coli lps ra complex
13 | c2z7xB_ |
|  | 99.6 | 12 | PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
14 | c2o6rA_ |
|  | 99.6 | 17 | PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b61
15 | c1ookG_ |
|  | 99.6 | 21 | PDB header:hydrolase Chain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor; PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin
16 | c3e6jA_ |
|  | 99.6 | 18 | PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor diversity region; PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide
17 | c2ft3B_ |
|  | 99.6 | 19 | PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein
18 | c2o6sA_ |
|  | 99.6 | 14 | PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59
19 | c2z63A_ |
|  | 99.6 | 14 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61
20 | c3ojaA_ |
|  | 99.6 | 15 | PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex
21 | d1p9ag_ |
| not modelled | 99.6 | 20 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like
22 | c2xotA_ |
| not modelled | 99.5 | 18 | PDB header:cell adhesion Chain: A: PDB Molecule:amphoterin-induced protein 1; PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1
23 | c3a79A_ |
| not modelled | 99.5 | 16 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
24 | c2z81A_ |
| not modelled | 99.5 | 16 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
25 | c2r9uC_ |
| not modelled | 99.5 | 15 | PDB header:immune system Chain: C: PDB Molecule:variable lymphocyte receptor; PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain
26 | c1ltxA_ |
| not modelled | 99.5 | 17 | PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
27 | d1xkua_ |
| not modelled | 99.5 | 22 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like
28 | c1xkuA_ |
| not modelled | 99.5 | 22 | PDB header:structural protein Chain: A: PDB Molecule:decorin; PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan
29 | c2wfhB_ |
| not modelled | 99.5 | 22 | PDB header:splicing Chain: B: PDB Molecule:slit homolog 2 protein c-product; PDBTitle: the human slit 2 dimerization domain d4
30 | d2omza2 |
| not modelled | 99.4 | 50 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain
31 | c2v70D_ |
| not modelled | 99.4 | 14 | PDB header:structural protein Chain: D: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: third lrr domain of human slit2
32 | c3rgxA_ |
| not modelled | 99.4 | 21 | PDB header:transferase Chain: A: PDB Molecule:protein brassinosteroid insensitive 1; PDBTitle: structural insight into brassinosteroid perception by bri1
33 | c2v9sC_ |
| not modelled | 99.4 | 18 | PDB header:structural protein Chain: C: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: second lrr domain of human slit2
34 | c2o6qA_ |
| not modelled | 99.4 | 18 | PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29
35 | d1w8aa_ |
| not modelled | 99.4 | 19 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like
36 | c3g3aA_ |
| not modelled | 99.3 | 21 | PDB header:hydrolase/immune system Chain: A: PDB Molecule:variable lymphocyte receptor vlrb.2d; PDBTitle: structure of a lamprey variable lymphocyte receptor in2 complex with a protein antigen
37 | c2id5D_ |
| not modelled | 99.3 | 17 | PDB header:ligand binding protein,membrane protein Chain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain
38 | c3rg1I_ |
| not modelled | 99.3 | 19 | PDB header:immune system Chain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex
39 | c2z80A_ |
| not modelled | 99.3 | 23 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
40 | d1dcea3 |
| not modelled | 99.2 | 18 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
41 | c3m18A_ |
| not modelled | 99.2 | 19 | PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region; PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme
42 | d1ozna_ |
| not modelled | 99.2 | 14 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like
43 | c3ojaB_ |
| not modelled | 99.2 | 8 | PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex
44 | c2z62A_ |
| not modelled | 99.2 | 21 | PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61
45 | c2je0E_ |
| not modelled | 99.1 | 17 | PDB header:nuclear protein Chain: E: PDB Molecule:acidic leucine-rich nuclear phosphoprotein 32 family PDBTitle: crystal structure of pp32
46 | c3bz5A_ |
| not modelled | 99.0 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder
47 | d2omxa2 |
| not modelled | 99.0 | 20 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain
48 | c1xeuA_ |
| not modelled | 99.0 | 14 | PDB header:cell invasion Chain: A: PDB Molecule:internalin c; PDBTitle: crystal structure of internalin c from listeria2 monocytogenes
49 | c1h6uA_ |
| not modelled | 99.0 | 25 | PDB header:cell adhesion Chain: A: PDB Molecule:internalin h; PDBTitle: internalin h: crystal structure of fused n-terminal2 domains.
50 | c3g04C_ |
| not modelled | 99.0 | 21 | PDB header:immune system Chain: C: PDB Molecule:thyrotropin receptor; PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody
51 | c3o6nA_ |
| not modelled | 99.0 | 25 | PDB header:protein binding Chain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain
52 | d1ogqa_ |
| not modelled | 98.9 | 26 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Polygalacturonase inhibiting protein PGIP
53 | c2y5qA_ |
| not modelled | 98.9 | 25 | PDB header:protein binding Chain: A: PDB Molecule:internalin b; PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392
54 | c1otnA_ |
| not modelled | 98.9 | 26 | PDB header:cell adhesion Chain: A: PDB Molecule:internalin b; PDBTitle: calcium-binding mutant of the internalin b lrr domain
55 | d1xwdc1 |
| not modelled | 98.9 | 32 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like
56 | d1a9na_ |
| not modelled | 98.8 | 16 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:U2A'-like
57 | d1h6ta2 |
| not modelled | 98.8 | 22 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain
58 | d1h6ua2 |
| not modelled | 98.8 | 23 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Internalin LRR domain
59 | c2ifgB_ |
| not modelled | 98.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:high affinity nerve growth factor receptor; PDBTitle: structure of the extracellular segment of human trka in complex with2 nerve growth factor
60 | c3o53A_ |
| not modelled | 98.8 | 27 | PDB header:protein binding Chain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain
61 | c2uzyA_ |
| not modelled | 98.8 | 19 | PDB header:signaling protein/receptor Chain: A: PDB Molecule:internalin b; PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii
62 | d2ifga3 |
| not modelled | 98.8 | 12 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:Ngr ectodomain-like
63 | c2z66A_ |
| not modelled | 98.7 | 16 | PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
64 | c2omwA_ |
| not modelled | 98.5 | 16 | PDB header:cell invasion/cell adhesion Chain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex
65 | c1kooD_ |
| not modelled | 98.1 | 9 | PDB header:rna binding protein Chain: D: PDB Molecule:tip associating protein; PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor
66 | c3gozA_ |
| not modelled | 98.0 | 32 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:leucine-rich repeat-containing protein; PDBTitle: crystal structure of the leucine-rich repeat-containing2 protein legl7 from legionella pneumophila. northeast3 structural genomics consortium target lgr148
67 | d1m9la_ |
| not modelled | 97.9 | 18 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:Outer arm dynein light chain 1 Family:Outer arm dynein light chain 1
68 | d1z7xw1 |
| not modelled | 97.8 | 16 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR
69 | c2ra8A_ |
| not modelled | 97.7 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr; PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43
70 | d1koha1 |
| not modelled | 97.6 | 9 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:L domain-like Family:mRNA export factor tap
71 | d2bnha_ |
| not modelled | 97.3 | 7 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR
72 | d2ca6a1 |
| not modelled | 97.0 | 7 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Rna1p (RanGAP1), N-terminal domain
73 | c3rfeB_ |
| not modelled | 96.9 | 12 | PDB header:cell adhesion Chain: B: PDB Molecule:platelet glycoprotein ib beta chain; PDBTitle: crystal structure of glycoprotein gpib ectodomain
74 | c1k5dL_ |
| not modelled | 96.8 | 8 | PDB header:signaling protein/signaling activator Chain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex
75 | d2astb2 |
| not modelled | 95.0 | 6 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Cyclin A/CDK2-associated p19, Skp2
76 | c3oglD_ |
| not modelled | 93.2 | 10 | PDB header:protein binding Chain: D: PDB Molecule:coronatine-insensitive protein 1; PDBTitle: structure of coi1-ask1 in complex with ja-isoleucine and the jaz12 degron
77 | c3ogmB_ |
| not modelled | 93.0 | 10 | PDB header:protein binding Chain: B: PDB Molecule:coronatine-insensitive protein 1; PDBTitle: structure of coi1-ask1 in complex with coronatine and the jaz1 degron
78 | c3e2jA_ |
| not modelled | 92.7 | 8 | PDB header:electron transport Chain: A: PDB Molecule:atp synthase subunit s, mitochondrial; PDBTitle: crystal structure of bovine coupling factor b
79 | c2p1nE_ |
| not modelled | 91.8 | 10 | PDB header:signaling protein Chain: E: PDB Molecule:transport inhibitor response 1 protein; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
80 | d1fs2a2 |
| not modelled | 89.9 | 9 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:Cyclin A/CDK2-associated p19, Skp2
81 | c1pgvA_ |
| not modelled | 82.8 | 9 | PDB header:protein binding Chain: A: PDB Molecule:tropomodulin tmd-1; PDBTitle: structural genomics of caenorhabditis elegans: tropomodulin2 c-terminal domain
82 | d1pgva_ |
| not modelled | 82.8 | 9 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR
83 | d1io0a_ |
| not modelled | 75.1 | 8 | Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Superfamily:RNI-like Family:28-residue LRR
84 | c1fqvK_ |
| not modelled | 15.3 | 9 | PDB header:ligase Chain: K: PDB Molecule:skp2; PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0