1 c1cmwA_
100.0
41
PDB header: transferaseChain: A: PDB Molecule: protein (dna polymerase i);PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain
2 c2kzzA_
100.0
100
PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase i);PDBTitle: klenow fragment with normal substrate and zinc only
3 c1njzA_
100.0
40
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase i;PDBTitle: cytosine-thymine mismatch at the polymerase active site
4 c4ktqA_
100.0
43
PDB header: transferase/dnaChain: A: PDB Molecule: protein (large fragment of dna polymerase i);PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
5 c1tk0A_
100.0
26
PDB header: transferase/electron transport/dnaChain: A: PDB Molecule: dna polymerase;PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site
6 d1qtma2
100.0
49
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: DNA polymerase I7 d2hhva2
100.0
49
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: DNA polymerase I8 d1kfsa2
100.0
100
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: DNA polymerase I9 d1x9ma2
100.0
27
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: DNA polymerase I10 c2ihnA_
100.0
15
PDB header: hydrolase/dnaChain: A: PDB Molecule: ribonuclease h;PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
11 c1ut8B_
100.0
22
PDB header: hydrolaseChain: B: PDB Molecule: exodeoxyribonuclease;PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
12 d1cmwa2
100.0
40
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain13 c1rxvA_
100.0
22
PDB header: hydrolase/dnaChain: A: PDB Molecule: flap structure-specific endonuclease;PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
14 c1a77A_
100.0
22
PDB header: 5'-3' exo/endo nucleaseChain: A: PDB Molecule: flap endonuclease-1 protein;PDBTitle: flap endonuclease-1 from methanococcus jannaschii
15 c3q8lA_
100.0
22
PDB header: hydrolase/dnaChain: A: PDB Molecule: flap endonuclease 1;PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
16 c1b43A_
100.0
22
PDB header: transferaseChain: A: PDB Molecule: protein (fen-1);PDBTitle: fen-1 from p. furiosus
17 c3oryA_
100.0
20
PDB header: hydrolaseChain: A: PDB Molecule: flap endonuclease 1;PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus
18 c2izoA_
100.0
22
PDB header: hydrolaseChain: A: PDB Molecule: flap structure-specific endonuclease;PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
19 c1yt3A_
100.0
17
PDB header: hydrolase,translationChain: A: PDB Molecule: ribonuclease d;PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
20 d1xo1a2
100.0
24
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain21 c1ul1Y_
not modelled
100.0
19
PDB header: hydrolase/dna binding proteinChain: Y: PDB Molecule: flap endonuclease-1;PDBTitle: crystal structure of the human fen1-pcna complex
22 d1tfra2
not modelled
100.0
18
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain23 c3qeaZ_
not modelled
100.0
19
PDB header: hydrolase/dnaChain: Z: PDB Molecule: exonuclease 1;PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii)
24 d1kfsa1
not modelled
100.0
100
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease25 d1cmwa1
not modelled
100.0
33
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain26 d2hhva1
not modelled
100.0
23
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease27 c3ikmD_
not modelled
99.9
25
PDB header: transferaseChain: D: PDB Molecule: dna polymerase subunit gamma-1;PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
28 d1yt3a3
not modelled
99.9
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease29 d2hbka2
not modelled
99.9
17
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease30 c2hbkA_
not modelled
99.9
16
PDB header: hydrolase, gene regulationChain: A: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn
31 d1xo1a1
not modelled
99.9
22
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain32 c3cymA_
not modelled
99.8
16
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: uncharacterized protein bad_0989;PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
33 c3sahA_
not modelled
99.8
17
PDB header: hydrolaseChain: A: PDB Molecule: exosome component 10;PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
34 c2e6mA_
not modelled
99.8
17
PDB header: hydrolaseChain: A: PDB Molecule: werner syndrome atp-dependent helicase homolog;PDBTitle: structure of mouse werner exonuclease domain
35 d1a77a1
not modelled
99.7
24
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain36 d1ul1x1
not modelled
99.7
20
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain37 d1rxwa1
not modelled
99.7
21
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain38 d1b43a1
not modelled
99.7
18
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain39 d1mc8a1
not modelled
99.6
19
Fold: SAM domain-likeSuperfamily: 5' to 3' exonuclease, C-terminal subdomainFamily: 5' to 3' exonuclease, C-terminal subdomain40 d1rxwa2
not modelled
99.6
24
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain41 d1a77a2
not modelled
99.6
22
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain42 d1b43a2
not modelled
99.5
23
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain43 d1mc8a2
not modelled
99.5
26
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain44 d1ul1x2
not modelled
99.5
16
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: 5' to 3' exonuclease catalytic domain45 d1vk0a_
not modelled
99.4
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease46 d1x9ma1
not modelled
99.0
21
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease47 d2qxfa1
not modelled
98.8
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease48 d1wn7a1
not modelled
98.7
25
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease49 c2is3B_
not modelled
98.7
11
PDB header: hydrolaseChain: B: PDB Molecule: ribonuclease t;PDBTitle: crystal structure of escherichia coli rnase t
50 d1y97a1
not modelled
98.7
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease51 d1tgoa1
not modelled
98.7
24
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease52 d1qhta1
not modelled
98.7
23
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease53 d1uoca_
not modelled
98.7
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease54 c2p1jB_
not modelled
98.6
23
PDB header: transferaseChain: B: PDB Molecule: dna polymerase iii polc-type;PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima
55 d1d5aa1
not modelled
98.6
22
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease56 d2f96a1
not modelled
98.5
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease57 d1wlja_
not modelled
98.5
22
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease58 d2d5ra1
not modelled
98.5
22
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease59 c3u6fA_
not modelled
98.5
16
PDB header: hydrolase/dnaChain: A: PDB Molecule: three prime repair exonuclease 1;PDBTitle: mouse trex1 d200n mutant
60 d1s5ja1
not modelled
98.5
23
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease61 d2guia1
not modelled
98.4
22
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease62 c2p51A_
not modelled
98.3
24
PDB header: hydrolase, gene regulationChain: A: PDB Molecule: spcc18.06c protein;PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit
63 d1j9aa_
not modelled
98.3
13
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease64 d3b6oa1
not modelled
98.3
14
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease65 c3tr8A_
not modelled
98.2
17
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
66 c1d5aA_
not modelled
98.2
24
PDB header: transferaseChain: A: PDB Molecule: protein (dna polymerase);PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
67 d1q8ia1
not modelled
98.2
18
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease68 c2vwkA_
not modelled
98.2
22
PDB header: dna replicationChain: A: PDB Molecule: dna polymerase;PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
69 c1s5jA_
not modelled
98.1
19
PDB header: transferaseChain: A: PDB Molecule: dna polymerase i;PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
70 d2igia1
not modelled
98.0
14
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease71 d1ih7a1
not modelled
98.0
24
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease72 d1noya_
not modelled
98.0
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease73 c2gbzA_
not modelled
98.0
12
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
74 c1q8iA_
not modelled
97.9
19
PDB header: transferaseChain: A: PDB Molecule: dna polymerase ii;PDBTitle: crystal structure of escherichia coli dna polymerase ii
75 c3iayA_
not modelled
97.7
17
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle: ternary complex of dna polymerase delta
76 c2xriA_
not modelled
97.7
12
PDB header: hydrolaseChain: A: PDB Molecule: eri1 exoribonuclease 3;PDBTitle: crystal structure of human eri1 exoribonuclease 3
77 c3cm6A_
not modelled
97.4
11
PDB header: hydrolase, apoptosisChain: A: PDB Molecule: cell death-related nuclease 4;PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
78 c2gv9B_
not modelled
97.3
21
PDB header: transferaseChain: B: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
79 d1w0ha_
not modelled
97.3
6
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease80 c2dtuA_
not modelled
97.3
23
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog
81 c1zbhA_
not modelled
97.1
10
PDB header: hydrolase/rnaChain: A: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
82 c3d45B_
not modelled
97.1
23
PDB header: hydrolaseChain: B: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle: crystal structure of mouse parn in complex with m7gpppg
83 c1kftA_
not modelled
97.1
37
PDB header: dna binding proteinChain: A: PDB Molecule: excinuclease abc subunit c;PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
84 d1kfta_
not modelled
97.1
37
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Excinuclease UvrC C-terminal domain85 d1x2ia1
not modelled
97.0
26
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like86 d2bgwa1
not modelled
96.9
28
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like87 c2nrzB_
not modelled
96.7
28
PDB header: hydrolaseChain: B: PDB Molecule: uvrabc system protein c;PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation
88 d2a1jb1
not modelled
96.7
30
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like89 d1dgsa1
not modelled
96.2
20
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: NAD+-dependent DNA ligase, domain 390 c1zbuB_
not modelled
96.2
6
PDB header: hydrolaseChain: B: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle: crystal structure of full-length 3'-exonuclease
91 d1cuka2
not modelled
96.1
23
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: DNA helicase RuvA subunit, middle domain92 d2i1qa1
not modelled
95.8
19
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain93 c1d8lA_
not modelled
95.7
24
PDB header: gene regulationChain: A: PDB Molecule: protein (holliday junction dna helicase ruva);PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii
94 c2a1sC_
not modelled
95.2
31
PDB header: hydrolaseChain: C: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle: crystal structure of native parn nuclease domain
95 d2aq0a1
not modelled
95.2
26
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: Hef domain-like96 c1hjpA_
not modelled
95.1
26
PDB header: dna recombinationChain: A: PDB Molecule: ruva;PDBTitle: holliday junction binding protein ruva from e. coli
97 d1ixra1
not modelled
95.1
35
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: DNA helicase RuvA subunit, middle domain98 d1pzna1
not modelled
95.1
24
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain99 c1ixrA_
not modelled
95.0
35
PDB header: hydrolaseChain: A: PDB Molecule: holliday junction dna helicase ruva;PDBTitle: ruva-ruvb complex
100 c2owoA_
not modelled
94.9
24
PDB header: ligase/dnaChain: A: PDB Molecule: dna ligase;PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
101 c2h5xA_
not modelled
94.9
27
PDB header: dna binding proteinChain: A: PDB Molecule: holliday junction atp-dependent dna helicase ruva;PDBTitle: ruva from mycobacterium tuberculosis
102 d1qtma1
not modelled
94.7
34
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease103 c2bhnD_
not modelled
94.2
30
PDB header: hydrolaseChain: D: PDB Molecule: xpf endonuclease;PDBTitle: xpf from aeropyrum pernix
104 c2ex3I_
not modelled
94.1
14
PDB header: transferase/replicationChain: I: PDB Molecule: dna polymerase;PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
105 c1dgsB_
not modelled
94.0
27
PDB header: ligaseChain: B: PDB Molecule: dna ligase;PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
106 d1bvsa2
not modelled
93.9
28
Fold: SAM domain-likeSuperfamily: RuvA domain 2-likeFamily: DNA helicase RuvA subunit, middle domain107 c1v9pB_
not modelled
93.5
26
PDB header: ligaseChain: B: PDB Molecule: dna ligase;PDBTitle: crystal structure of nad+-dependent dna ligase
108 c3spaA_
not modelled
93.1
22
PDB header: transferaseChain: A: PDB Molecule: dna-directed rna polymerase, mitochondrial;PDBTitle: crystal structure of human mitochondrial rna polymerase
109 d1mswd_
not modelled
92.2
22
Fold: DNA/RNA polymerasesSuperfamily: DNA/RNA polymerasesFamily: T7 RNA polymerase110 c3c1zA_
not modelled
92.0
16
PDB header: dna binding proteinChain: A: PDB Molecule: dna integrity scanning protein disa;PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein
111 c2w9mB_
not modelled
91.2
25
PDB header: dna replicationChain: B: PDB Molecule: polymerase x;PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
112 d1szpa1
not modelled
90.9
14
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain113 c2qipA_
not modelled
90.6
22
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: protein of unknown function vpa0982;PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
114 c1nomA_
not modelled
90.6
26
PDB header: nucleotidyltransferaseChain: A: PDB Molecule: dna polymerase beta;PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
115 c3majA_
not modelled
90.5
13
PDB header: dna binding proteinChain: A: PDB Molecule: dna processing chain a;PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
116 c2ihmA_
not modelled
89.8
33
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase mu;PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide
117 d2py5a1
not modelled
88.2
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease118 c2csdB_
not modelled
87.7
43
PDB header: isomeraseChain: B: PDB Molecule: topoisomerase v;PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
119 d2fmpa2
not modelled
86.8
16
Fold: SAM domain-likeSuperfamily: PsbU/PolX domain-likeFamily: DNA polymerase beta-like, second domain120 c8iczA_
not modelled
86.5
21
PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase beta (e.c.2.7.7.7));PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
