PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2gbzA_

Fold library id	PDB Header	Molecule	Title
c2gbzA_	PDB header: hydrolase	Chain: A: PDB Molecule: oligoribonuclease;	PDBTitle: the crystal structure of xc847 from xanthomonas campestris:2 a 3-5 oligoribonuclease of dnaq fold family with a novel3 opposingly-shifted helix

Links to external resources
Added to library: Tue Mar 16 14:08:46 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N D R L I W I D L E M T G L D T D R D S I I E I A T I V T D A Q L N V L A E G P E L A I A H S L E T L E A M D E W N R N Q H R R S G L W Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T T
T T
T S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L D S Q V T H A Q A E A Q T V A F L G E W I R A G A S P M C G N S I C Q D R R F L H R Q M S R L E R Y F H Y R N L D V S T I K E L A R R W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T S S
S S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . .

Sequence A P A V A S G F A K S S A H T A L S D V R D S I D E L R H Y R Q F M G T L G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T
S
S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	D	R	L	I	W	I	D	L	E	M	T	G	L	D	T	D	R	D	S	I	I	E	I	A	T	I	V	T	D	A	Q	L	N	V	L	A	E	G	P	E	L	A	I	A	H	S	L	E	T	L	E	A	M	D	E	W	N	R	N	Q	H	R	R	S	G	L	W	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S		T	T	T													T	T																					T	S		S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	D	S	Q	V	T	H	A	Q	A	E	A	Q	T	V	A	F	L	G	E	W	I	R	A	G	A	S	P	M	C	G	N	S	I	C	Q	D	R	R	F	L	H	R	Q	M	S	R	L	E	R	Y	F	H	Y	R	N	L	D	V	S	T	I	K	E	L	A	R	R	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	T			T	T	S	S					S	S																			S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Sequence	A	P	A	V	A	S	G	F	A	K	S	S	A	H	T	A	L	S	D	V	R	D	S	I	D	E	L	R	H	Y	R	Q	F	M	G	T	L	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G	T	T					S			S																	T	T	S