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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c8iczA_

Fold library idPDB HeaderMoleculeTitle
c8iczA_PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase beta (e.c.2.7.7.7));PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)


Added to library: Tue Mar 16 13:28:11 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA
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Known secondary structure (DSSP)

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TSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence TGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEK
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Known secondary structure (DSSP) SSS

TTSTT

TTT

STGGGS
TTTTTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQL
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Known secondary structure (DSSP)

TT

STTTT

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SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence QKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALE
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Known secondary structure (DSSP) TTSTT




SSS




GGGT

 .........290.........300.........310.........320.......
Sequence KGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
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Known secondary structure (DSSP) TT

TT



TTS







SSTT




GGG



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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