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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1dgsB_

Fold library idPDB HeaderMoleculeTitle
c1dgsB_PDB header: ligaseChain: B: PDB Molecule: dna ligase;PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis


Added to library: Tue Mar 16 12:07:10 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARPLE
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Known secondary structure (DSSP)

TTS

SS

GGG

TTSGGGT
SSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence PTFRPVRHPTRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSVLYYEEGVWSTGSGDGEVG
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Known secondary structure (DSSP)




SS






STTSSS
SS


S
TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence EEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRV
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Known secondary structure (DSSP)

TTSTTS
SB
SS

S
B

SS



SSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TAKRGLRATFYALGLGLGLEESGLKSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPF
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Known secondary structure (DSSP) S

B

SSSSSSSS



BTT



S
STGGGSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSE
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Known secondary structure (DSSP)


SBTTS
B
SSSBTT





TT
BSSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGKERPIRWPEACPECGHRLVKEGKVH
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Known secondary structure (DSSP)

STT
BSS
TTT
GGG

S


B



SB
TTT

B
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence RCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQN
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Known secondary structure (DSSP)


TT
GGGSTTTT

TT

TS
SSGGGGTT


TTSS

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLK
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Known secondary structure (DSSP) GGGS
T
TT


BT

TSTT

 .........570.........580.
Sequence DPAFRDLVRRLKEAGVSMESK
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Known secondary structure (DSSP)
TT


B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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