PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1yt3A_

Fold library id	PDB Header	Molecule	Title
c1yt3A_	PDB header: hydrolase,translation	Chain: A: PDB Molecule: ribonuclease d;	PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing

Links to external resources
Added to library: Tue Mar 16 14:00:28 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N Y Q M I T T D D A L A S L C E A V R A F P A I A L D T E F V R T R T Y Y P Q L G L I Q L F D G E H L A L I D P L G I T D W S P L K A I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
S
S S
S S
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R D P S I T K F L H A G S E D L E V F L N V F G E L P Q P L I D T Q I L A A F C G R P M S W G F A S M V E E Y S G V T L D K S E S R T D W L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
S S
S S T T
T T
T T T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A R P L T E R Q C E Y A A A D V W Y L L P I T A K L M V E T E A S G W L P A A L D E C R L M Q M R R Q E V V A P E D A W R D I T N A W Q L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T T
G G G G G G G S T T G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T R Q L A C L Q L L A D W R L R K A R E R D L A V N F V V R E E H L W S V A R Y M P G S L G E L D S L G L S G S E I R F H G K T L L A L V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G T S
S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K A Q T L P E D A L P Q P M L N L M D M P G Y R K A F K A I K S L I T D V S E T H K I S A E L L A S R R Q I N Q L L N W H W K L K P Q N N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S
G G G S T T T
T T
S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . .

Sequence P E L I S G W R G E L M A E A L H N L L Q E Y P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	Y	Q	M	I	T	T	D	D	A	L	A	S	L	C	E	A	V	R	A	F	P	A	I	A	L	D	T	E	F	V	R	T	R	T	Y	Y	P	Q	L	G	L	I	Q	L	F	D	G	E	H	L	A	L	I	D	P	L	G	I	T	D	W	S	P	L	K	A	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S												T	T	S	S												S		S	S											S	S							G	G	G		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	D	P	S	I	T	K	F	L	H	A	G	S	E	D	L	E	V	F	L	N	V	F	G	E	L	P	Q	P	L	I	D	T	Q	I	L	A	A	F	C	G	R	P	M	S	W	G	F	A	S	M	V	E	E	Y	S	G	V	T	L	D	K	S	E	S	R	T	D	W	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S					S	S													S	S			S	S											T	T			T	T																		T	T	T	T	S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	R	P	L	T	E	R	Q	C	E	Y	A	A	A	D	V	W	Y	L	L	P	I	T	A	K	L	M	V	E	T	E	A	S	G	W	L	P	A	A	L	D	E	C	R	L	M	Q	M	R	R	Q	E	V	V	A	P	E	D	A	W	R	D	I	T	N	A	W	Q	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S															T															T	T																						G	G	G	G	G	G	G	S	T	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	R	Q	L	A	C	L	Q	L	L	A	D	W	R	L	R	K	A	R	E	R	D	L	A	V	N	F	V	V	R	E	E	H	L	W	S	V	A	R	Y	M	P	G	S	L	G	E	L	D	S	L	G	L	S	G	S	E	I	R	F	H	G	K	T	L	L	A	L	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T			G	G	G	T	S															S							T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	A	Q	T	L	P	E	D	A	L	P	Q	P	M	L	N	L	M	D	M	P	G	Y	R	K	A	F	K	A	I	K	S	L	I	T	D	V	S	E	T	H	K	I	S	A	E	L	L	A	S	R	R	Q	I	N	Q	L	L	N	W	H	W	K	L	K	P	Q	N	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		G	G	G	S							G	G	G	S	T	T																				T																				T	T		S			S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence	P	E	L	I	S	G	W	R	G	E	L	M	A	E	A	L	H	N	L	L	Q	E	Y	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S																T	T	S