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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2gv9B_

Fold library idPDB HeaderMoleculeTitle
c2gv9B_PDB header: transferaseChain: B: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the herpes simplex virus type 1 dna2 polymerase


Added to library: Tue Mar 16 12:16:02 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TGPTQRHTYYSECDEFRFIAPRVLDEDAPPEKRAGVHDGHLKRAPKVYCGGDERDVLRVGSGGFWPRRSR
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Known secondary structure (DSSP)


SS


S
S

S
GGG
TTS
SGGGSS
S

TTTT

SS

SS



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LWGGVDHAPAGFNPTVTVFHVYDILENVEHAYGMRAAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHV
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Known secondary structure (DSSP) TT
S
TT





TTS


TTSS
TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence YGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESRGISADHFEAEVVERTDVYYYETRPALFYRVYV
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Known secondary structure (DSSP)


TTTTS
SSS





STT
SS
TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence RSGRVLSYLCDNFCPAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEF
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Known secondary structure (DSSP) S
TTS
SS


BSTT

TSTT

SS

BTTTB



GGG

BS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence NCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFS
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Known secondary structure (DSSP) GGG
SS

S





SS
TTS


TTSTTSTTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence LGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIY
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Known secondary structure (DSSP) S




TT



SS

SSSTTTTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKK
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Known secondary structure (DSSP)



TTSSSBSSS




SS

TTS



BTTBTT


S

S




 .........500.........510.........520.........530.........540.........550.........560
Sequence DLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIRVFT
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Known secondary structure (DSSP)


TTT

T

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence CLLRLADQKGFILPDTVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLE
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Known secondary structure (DSSP) T
B








S
TTTT

TTTS
T




TS
TTTT

 .........640.........650.........660.........670.........680.........690.........700
Sequence IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQ
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Known secondary structure (DSSP) SSS

TTT


GGGS
TT
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence HGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLC
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Known secondary structure (DSSP) TSSS

TSS
TTGGGTB
SS


SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence RGLTAAGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGGKMLIKGVDLVRKNNCA
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Known secondary structure (DSSP) TB
STT

TT

TTTTS
S

S

TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLT
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Known secondary structure (DSSP)
TTSS
GGGGGTS


GGG
SS

GGGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence AELSRHPRAYTNKRLAHLTVYYKLMARRAQVPSIKDRIPYVIVAQTREVEETVARLAALRELDKLLVSEL
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Known secondary structure (DSSP)

S
GGG
SS


TT




TT
B


TT



GGGG
 .........990.........1000.........1010.........1020.........1030.....
Sequence AEDPAYAIAHGVALNTDYYFSHLLGAACVTFKALFGNNAKITESLLKRFIPEVWH
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Known secondary structure (DSSP)
TT

B
GGGGTT
TTS
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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