Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3ikmD_

Fold library idPDB HeaderMoleculeTitle
c3ikmD_PDB header: transferaseChain: D: PDB Molecule: dna polymerase subunit gamma-1;PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme


Added to library: Sat Aug 28 22:02:31 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPLPDVELRLPPLYGDNLDQHF
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)




SSS


TS
SS
S


STT

SS
















SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLLAQKQSLPYLEAANLLLQAQLPPKPPAWAWAEGWTRYGPEGEAVPVAIPEERALVFDVEVCLAEGTCP
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)







TT


SS




TT




SSS


SS





SSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence TLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIR
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)



SSS




TSSS
SSS

GGGSSSSS

SSSTT
SSTT

SS






STTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGWDWLDISSVNSLAEVHRLYVGGPPLEKEPRE
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTTT










T








STTTST
SSTTTSSSSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) GGGSS
STTSSS

S





 .........360.........370.........380.........390.........400.........410.........420
Sequence AEAQGTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPI
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) S

SSTTSS

S






S
S

S

SS



 .........430.........440.........450.........460.........470.........480.........490
Sequence EGAGAPGDPMDQEDLGPCSEEEEFQQDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAW
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)


TTT











S

S
SSSTT
SSTTT





SS
SS




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESL
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)
SSS

GGGTSTTTT


SSS




TTS





SSS




TTTTSS
STTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence YRKHCLEQGKQQLMPQEARAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSC
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) TTS



SSS
ST
SSSS
S


SS

S


SSS

TT






TTT
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence NVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPD
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S


SS
STSSSS

S
SS
SSTTTT






S

S
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence YDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)

SSS









SS
SSS




TTTTS


SSS
S


TT


 .........780.........790.........800.........810.........820.........830.........840
Sequence VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFN
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) SS
TTTTTTTTTS
S

TTSTTTT
S
SSSS

TS
 .........850.........860.........870.........880.........890.........900.........910
Sequence HRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKK
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
SSTT
SSSS
SSSTTTSSSSSS
TTSSS

TT
TTSSS

S

S

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence WEVVAERAWKGGTESEMFNKLESIATSDIPRTPVEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAI
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTTTTS
SS
SS
BSSSB




SSSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTM
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
TTSTTTTSS


TTTS

S
SS

TTSS
 .........1060.........1070.........1080.........1090....
Sequence DCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGSLEKRSQPGP
Predicted secondary structure




































SS confidence











































Known secondary structure (DSSP)



SSTTS




TSTT

SSSSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D