PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3c1zA_

Fold library id	PDB Header	Molecule	Title
c3c1zA_	PDB header: dna binding protein	Chain: A: PDB Molecule: dna integrity scanning protein disa;	PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein

Links to external resources
Added to library: Tue Mar 16 13:36:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V P Q E L I E K I K L I S P G T E L R K A L D D I I N A N F G A L I F L V D D P K K Y E D V I Q G G F W L D T D F S A E K L Y E L S K M D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T S T
S
G G G G T T T S S
T T S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A I V L S E D I T K I Y Y A N V H L V P D P T I P T G E T G T R H R T A E R L A K Q T G K V V I A V S R R R N I I S L Y Y K N Y K Y V V N Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T S
S S S
S S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V D F L I S K V T Q A I S T L E K Y K D N F N K L L S E L E V L E L E N R V T L A D V V R T L A K G F E L L R I V E E I R P Y I V E L G E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B T G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G R L A R M Q L R E L T E D V D D L L V L L I M D Y S S E E V E E E T A Q N I L Q D F I T R R E P S P I S I S R V L G Y D V Q Q A A Q L D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T T S S S
T S
T T
S S G G G G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . .

Sequence V L V S A R G Y R L L K T V A R I P L S I G Y N V V R M F K T L D Q I S K A S V E D L K K V E G I G E K R A R A I S E S I S S L K H R K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S T S
S T T
T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	P	Q	E	L	I	E	K	I	K	L	I	S	P	G	T	E	L	R	K	A	L	D	D	I	I	N	A	N	F	G	A	L	I	F	L	V	D	D	P	K	K	Y	E	D	V	I	Q	G	G	F	W	L	D	T	D	F	S	A	E	K	L	Y	E	L	S	K	M	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S	T	T	S													T									S		G	G	G	G	T	T	T			S	S																T	T	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	I	V	L	S	E	D	I	T	K	I	Y	Y	A	N	V	H	L	V	P	D	P	T	I	P	T	G	E	T	G	T	R	H	R	T	A	E	R	L	A	K	Q	T	G	K	V	V	I	A	V	S	R	R	R	N	I	I	S	L	Y	Y	K	N	Y	K	Y	V	V	N	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S														T	T	S						S														S	S							S	S	S	S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	D	F	L	I	S	K	V	T	Q	A	I	S	T	L	E	K	Y	K	D	N	F	N	K	L	L	S	E	L	E	V	L	E	L	E	N	R	V	T	L	A	D	V	V	R	T	L	A	K	G	F	E	L	L	R	I	V	E	E	I	R	P	Y	I	V	E	L	G	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																			T	T			B																												T	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	R	L	A	R	M	Q	L	R	E	L	T	E	D	V	D	D	L	L	V	L	L	I	M	D	Y	S	S	E	E	V	E	E	E	T	A	Q	N	I	L	Q	D	F	I	T	R	R	E	P	S	P	I	S	I	S	R	V	L	G	Y	D	V	Q	Q	A	A	Q	L	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G												T	T													S	S	S																	T	S											T	T				S	S	G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Sequence	V	L	V	S	A	R	G	Y	R	L	L	K	T	V	A	R	I	P	L	S	I	G	Y	N	V	V	R	M	F	K	T	L	D	Q	I	S	K	A	S	V	E	D	L	K	K	V	E	G	I	G	E	K	R	A	R	A	I	S	E	S	I	S	S	L	K	H	R	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B					S							T	S																S					T	T								T	S	T	T