PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3u6fA_

Fold library id	PDB Header	Molecule	Title
c3u6fA_	PDB header: hydrolase/dna	Chain: A: PDB Molecule: three prime repair exonuclease 1;	PDBTitle: mouse trex1 d200n mutant

Links to external resources
Added to library: Sat Dec 31 16:42:50 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P H G H M Q T L I F L D L E A T G L P S S R P E V T E L C L L A V H R R A L E N S Q G H P P P V P R P P R V V D K L S L C I A P G K A C S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G
S S S
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A S E I T G L S K A E L E V Q G R Q R F D D N L A I L L R A F L Q R Q P Q P C C L V A H N G D R Y D F P L L Q T E L A R L S T P S P L D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S
T S
S S T T T T T T T
S S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T F C V D S I A A L K A L E Q A R K S Y S L G S I Y T R L Y W Q A P T D S H T A E G N V L T L L S I C Q W K P Q A L L Q W V D E H A R P F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S S
S
S S S T S S
T T

. . . . . . .

Sequence T V K P M Y G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	H	G	H	M	Q	T	L	I	F	L	D	L	E	A	T	G	L	P	S	S	R	P	E	V	T	E	L	C	L	L	A	V	H	R	R	A	L	E	N	S	Q	G	H	P	P	P	V	P	R	P	P	R	V	V	D	K	L	S	L	C	I	A	P	G	K	A	C	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S										S	S		G	G	G																						S	S	S								S	S											S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	S	E	I	T	G	L	S	K	A	E	L	E	V	Q	G	R	Q	R	F	D	D	N	L	A	I	L	L	R	A	F	L	Q	R	Q	P	Q	P	C	C	L	V	A	H	N	G	D	R	Y	D	F	P	L	L	Q	T	E	L	A	R	L	S	T	P	S	P	L	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S									T	T				S														T	S		S	S						T	T	T	T	T	T											T		S	S			S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	F	C	V	D	S	I	A	A	L	K	A	L	E	Q	A	R	K	S	Y	S	L	G	S	I	Y	T	R	L	Y	W	Q	A	P	T	D	S	H	T	A	E	G	N	V	L	T	L	L	S	I	C	Q	W	K	P	Q	A	L	L	Q	W	V	D	E	H	A	R	P	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T						S										S	S			S		S	S	S													T	S	S															T	T
	.	.	.	.	.	.	.
Sequence	T	V	K	P	M	Y	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S			S