Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	W	S	R	H	L	L	A	A	G	A	L	A	L	G	M	S	A	A	H	A	D	D	N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E
Secondary structure
SS confidence
Disorder		?	?	?															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D
Secondary structure
SS confidence
Disorder												?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L
Secondary structure
SS confidence
Disorder																																																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G
Secondary structure
SS confidence
Disorder							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	P	I	D	V	V	W	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Sequence		R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K	A	G	R
Secondary structure
SS confidence
Disorder																																															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pot chain A Region: 26 - 347 Aligned: 322 Modelled: 322 Confidence: 100.0% Identity: 100% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2v84 chain A Region: 27 - 346 Aligned: 313 Modelled: 320 Confidence: 100.0% Identity: 31% PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Phyre2 PDB 1a99 chain A Region: 26 - 347 Aligned: 321 Modelled: 322 Confidence: 100.0% Identity: 34% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 3o3u chain N Region: 25 - 348 Aligned: 318 Modelled: 324 Confidence: 100.0% Identity: 18% PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) Phyre2 PDB 3h4z chain C Region: 25 - 348 Aligned: 318 Modelled: 324 Confidence: 100.0% Identity: 18% PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein Phyre2 PDB 3osq chain A Region: 25 - 348 Aligned: 319 Modelled: 324 Confidence: 100.0% Identity: 21% PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 Phyre2 PDB 3f5f chain A Region: 24 - 348 Aligned: 319 Modelled: 325 Confidence: 100.0% Identity: 18% PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. Phyre2 PDB 3ob4 chain A Region: 25 - 344 Aligned: 314 Modelled: 320 Confidence: 100.0% Identity: 18% PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 Phyre2 PDB 3py7 chain A Region: 25 - 344 Aligned: 314 Modelled: 317 Confidence: 100.0% Identity: 18% PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Phyre2 PDB 3d4c chain A Region: 26 - 348 Aligned: 317 Modelled: 323 Confidence: 100.0% Identity: 18% PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) Phyre2 PDB 3dm0 chain A Region: 23 - 348 Aligned: 320 Modelled: 326 Confidence: 100.0% Identity: 18% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 3mp6 chain A Region: 23 - 346 Aligned: 319 Modelled: 324 Confidence: 100.0% Identity: 17% PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 Phyre2 PDB 1y4c chain A Region: 26 - 344 Aligned: 313 Modelled: 319 Confidence: 100.0% Identity: 18% PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Phyre2 PDB 1r6z chain A Region: 25 - 344 Aligned: 315 Modelled: 320 Confidence: 100.0% Identity: 17% PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) Phyre2 PDB 3c4m chain A Region: 22 - 348 Aligned: 322 Modelled: 327 Confidence: 100.0% Identity: 17% PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) Phyre2 PDB 1hsj chain A Region: 24 - 346 Aligned: 318 Modelled: 323 Confidence: 100.0% Identity: 17% PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure Phyre2 PDB 3oai chain B Region: 23 - 348 Aligned: 320 Modelled: 326 Confidence: 100.0% Identity: 18% PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero Phyre2 PDB 2vgq chain A Region: 25 - 344 Aligned: 314 Modelled: 320 Confidence: 100.0% Identity: 17% PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card Phyre2 PDB 3rpw chain A Region: 25 - 348 Aligned: 318 Modelled: 323 Confidence: 100.0% Identity: 22% PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 Phyre2 PDB 3csg chain A Region: 28 - 346 Aligned: 313 Modelled: 319 Confidence: 100.0% Identity: 17% PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex Phyre2 1 d1pota_ 2 c2v84A_ 3 d1a99a_ 4 c3o3uN_ 5 c3h4zC_ 6 c3osqA_ 7 c3f5fA_ 8 c3ob4A_ 9 c3py7A_ 10 c3d4cA_ 11 c3dm0A_ 12 c3mp6A_ 13 c1y4cA_ 14 c1r6zA_ 15 c3c4mA_ 16 c1hsjA_ 17 c3oaiB_ 18 c2vgqA_ 19 c3rpwA_ 20 c3csgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pota_ 100.0 100 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 2 c2v84A_ 100.0 31 PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum 3 d1a99a_ 100.0 34 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 4 c3o3uN_ 100.0 18 PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) 5 c3h4zC_ 100.0 18 PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein 6 c3osqA_ 100.0 21 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 7 c3f5fA_ 100.0 18 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 8 c3ob4A_ 100.0 18 PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 9 c3py7A_ 100.0 18 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 10 c3d4cA_ 100.0 18 PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) 11 c3dm0A_ 100.0 18 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 12 c3mp6A_ 100.0 17 PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 13 c1y4cA_ 100.0 18 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 14 c1r6zA_ 100.0 17 PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) 15 c3c4mA_ 100.0 17 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 16 c1hsjA_ 100.0 17 PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure 17 c3oaiB_ 100.0 18 PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero 18 c2vgqA_ 100.0 17 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 19 c3rpwA_ 100.0 22 PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 20 c3csgA_ 100.0 17 PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex 21 c2nvuB_ not modelled 100.0 17 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 22 c3pu5A_ not modelled 100.0 14 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis 23 c3uorB_ not modelled 100.0 15 PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri 24 c3k02A_ not modelled 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium. 25 c3osrA_ not modelled 100.0 17 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311 26 c3ehuA_ not modelled 100.0 17 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp; PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf 27 c2zykA_ not modelled 100.0 15 PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin 28 c1mg1A_ not modelled 100.0 17 PDB header:viral protein Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera 29 c2xd3A_ not modelled 100.0 17 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose. 30 c3qufB_ not modelled 100.0 12 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 31 d1eu8a_ not modelled 100.0 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 32 d1elja_ not modelled 100.0 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 33 d1ursa_ not modelled 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 34 c1ursA_ not modelled 100.0 13 PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius 35 c2gh9A_ not modelled 100.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose 36 c2qryD_ not modelled 100.0 16 PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein 37 c2pt1A_ not modelled 100.0 18 PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803 38 d1y4ta_ not modelled 100.0 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 39 c1svxB_ not modelled 100.0 18 PDB header:de novo protein/sugar binding protein Chain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein 40 c3iouB_ not modelled 100.0 16 PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94 41 c2fncA_ not modelled 100.0 17 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. 42 d3thia_ not modelled 100.0 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 43 c2z8fB_ not modelled 100.0 11 PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose 44 c1mh3A_ not modelled 100.0 17 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 45 d1y9ua_ not modelled 100.0 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 46 d1q35a_ not modelled 100.0 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 47 d1laxa_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 48 c2vozA_ not modelled 100.0 12 PDB header:metal-binding protein Chain: A: PDB Molecule:periplasmic iron-binding protein; PDBTitle: apo futa2 from synechocystis pcc6803 49 c3oo6A_ not modelled 100.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose 50 d1xc1a_ not modelled 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 51 c2uvgA_ not modelled 100.0 17 PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica 52 c3c9hB_ not modelled 100.0 17 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens 53 c2w7yA_ not modelled 100.0 13 PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. 54 d1nnfa_ not modelled 100.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 55 c2i58B_ not modelled 100.0 13 PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose 56 d1xvxa_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 57 c2b3fD_ not modelled 100.0 11 PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose 58 c3i3vC_ not modelled 100.0 12 PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor 59 d1xvya_ not modelled 100.0 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 60 d1y3na1 not modelled 100.0 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 61 d1j1na_ not modelled 100.0 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 62 c3ombA_ not modelled 99.9 16 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 63 d2onsa1 not modelled 99.9 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 64 d1atga_ not modelled 99.9 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 65 c3cfxA_ not modelled 99.9 13 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate 66 c3k6wA_ not modelled 99.9 15 PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans 67 d1amfa_ not modelled 99.9 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 68 d1sbpa_ not modelled 99.9 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 69 c3cg3A_ not modelled 99.9 11 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate 70 c3cg1A_ not modelled 99.9 10 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate 71 c3cfzA_ not modelled 99.9 13 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate 72 c2h5yC_ not modelled 99.9 11 PDB header:metal transport Chain: C: PDB Molecule:molybdate-binding periplasmic protein; PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate 73 c3fj7A_ not modelled 99.8 12 PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3 74 c3lr1A_ not modelled 99.7 17 PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens 75 c3muqB_ not modelled 99.6 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633 76 c3kn3C_ not modelled 99.5 15 PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes 77 c1twyG_ not modelled 99.4 17 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae 78 d1twya_ not modelled 99.4 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 79 d1pc3a_ not modelled 98.0 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 80 d1ixha_ not modelled 97.1 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 81 d1xs5a_ not modelled 96.7 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 82 c3k2dA_ not modelled 96.6 13 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 83 c3tqwA_ not modelled 96.0 17 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 84 c3ir1F_ not modelled 96.0 11 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 85 c3gxaA_ not modelled 95.5 11 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 86 c3cvgC_ not modelled 94.8 15 PDB header:metal binding protein Chain: C: PDB Molecule:putative metal binding protein; PDBTitle: crystal structure of a periplasmic putative metal binding protein 87 c3l6gA_ not modelled 92.7 16 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 88 c3n5lA_ not modelled 92.3 13 PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution 89 d1p99a_ not modelled 91.0 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 90 c1p99A_ not modelled 91.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 91 c3e4rA_ not modelled 88.0 15 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes 92 c3tmgA_ not modelled 86.1 13 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 93 c2x26A_ not modelled 79.1 11 PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli 94 c3un6A_ not modelled 74.3 7 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 95 d2v3qa1 not modelled 68.8 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 96 c2h9bB_ not modelled 63.1 7 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) 97 c2f78A_ not modelled 60.9 7 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate 98 c1al3A_ not modelled 57.1 18 PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes 99 d1al3a_ not modelled 57.1 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 100 c2q2aD_ not modelled 55.2 9 PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus 101 c2f7cA_ not modelled 49.7 13 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate 102 c2h9qC_ not modelled 48.1 13 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) 103 d2esna2 not modelled 47.5 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 104 c3n6uA_ not modelled 46.4 14 PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate 105 c2rejA_ not modelled 45.9 11 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 106 c3jv9B_ not modelled 45.7 7 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis 107 c3oxnD_ not modelled 42.5 9 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus 108 c3uifA_ not modelled 41.5 15 PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt 109 c2ql3G_ not modelled 41.4 16 PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 110 c3mz1D_ not modelled 38.2 17 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021 111 d2fyia1 not modelled 37.8 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 112 d1ixca2 not modelled 35.8 20 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 113 c3ho7A_ not modelled 34.4 18 PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis 114 c2hxrA_ not modelled 33.8 14 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism 115 c2fqxA_ not modelled 32.5 22 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 116 c2uyeA_ not modelled 32.3 13 PDB header:transcription Chain: A: PDB Molecule:regulatory protein; PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate 117 d1utha_ not modelled 32.1 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 118 c1jrjA_ not modelled 32.0 25 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 119 c2de4B_ not modelled 31.2 12 PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid 120 c1d0rA_ not modelled 30.3 25 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0