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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: d3thia_

Fold library idFoldSuperfamilyFamily
d3thia_Periplasmic binding protein-like IIPeriplasmic binding protein-like IIPhosphate binding protein-like


Added to library: Tue Mar 16 13:11:53 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ITLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSIFLSHFVDAGYLL
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Known secondary structure (DSSP)


S
SS

TTS



TTT



TT

GGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence PFGSQDIDQAEDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKIGTSHSEQIP
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Known secondary structure (DSSP)
B
GGG
TTGGGB
TTT


TT
T

B






SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PPQNKGLLINMAGGTTKASMYLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPED
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Known secondary structure (DSSP)




ST




SS


SSS





TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GDAYVRASWFAQGSGRAFIGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKK
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Known secondary structure (DSSP)

TTTBTTGGGGGT

BS
SS



TT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LANVMASADTVEQALRPQADGQYPQYLLPARHQVYEALMQDYPIYSELAQIVNKPSNRVFRLGPEVRTWL
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Known secondary structure (DSSP) SS

STT





SBTTT
TT
TT




TT
 .........360..
Sequence KDAKQVLPEALG
Predicted secondary structure

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Known secondary structure (DSSP) TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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