PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2f78A_

Fold library id	PDB Header	Molecule	Title
c2f78A_	PDB header: gene regulation	Chain: A: PDB Molecule: hth-type transcriptional regulator benm;	PDBTitle: benm effector binding domain with its effector benzoate

Links to external resources
Added to library: Tue Mar 16 12:20:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V E K T I R I G F V G S L L F G L L P R I I H L Y R Q A H P N L R I E L Y E M G T K A Q T E A L K E G R I D A G F G R L K I S D P A I K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G G G T T
T T
T S
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T L L R N E R L M V A V H A S H P L N Q M K D K G V H L N D L I D E K I L L Y P S S P K P N F S T H V M N I F S D H G L E P T K I N E V R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S G G G G G T T T
B
G G G S T T S
S S S S S T T T
S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V Q L A L G L V A A G E G I S L V P A S T Q S I Q L F N L S Y V P L L D P D A I T P I Y I A V R N M E E S T Y I Y S L Y E T I R Q I Y A Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
B G G G G G
T T B
T T
S S
T

. . . . . . . . . 220 . .

Sequence G F T E P P N W L E H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									G	G	G	G	G	T	T													T	T																				T	S		S					S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	L	L	R	N	E	R	L	M	V	A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S	T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S		B					G	G	G	G	G				T	T						B			T	T											S	S																				T
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	G	F	T	E	P	P	N	W	L	E	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T					T	T		S