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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2qryD_

Fold library idPDB HeaderMoleculeTitle
c2qryD_PDB header: transport proteinChain: D: PDB Molecule: thiamine-binding periplasmic protein;PDBTitle: periplasmic thiamin binding protein


Added to library: Tue Mar 16 13:28:50 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRXEGKNSKADVVLGLDNNLL
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Known secondary structure (DSSP)



STTSSSS
S
S
GGG


SGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence DAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQD
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Known secondary structure (DSSP) TTT
B





TTS


TT



SS
TTT
SS

SS
SS



 .........150.........160.........170.........180.........190.........200.........210
Sequence PRTSTPGLGLLLWXQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEK
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Known secondary structure (DSSP) TTT
GGGTTSSTTS
STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFXVSPAFQNAIPTGNWXYPVANVTLPAGFEKLT
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Known secondary structure (DSSP)





TT
BTT
S
TSTTT
SSS




TTGGGS
 .........290.........300.........310
Sequence KPATTLEFTPAEVAAQRQAWISEWQRAVSR
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Known secondary structure (DSSP)

SS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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