PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d2fyia1

Fold library id	Fold	Superfamily	Family
d2fyia1	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like

Links to external resources
Added to library: Tue Mar 16 12:39:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T N D T S G V L T I A T T H T Q A R Y S L P E V I K A F R E L F P E V R L E L I Q G T P Q E I A T L L Q N G E A D I G I A S E R L S N D P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
T T
T S
S S S S S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V A F P W F R W H H S L L V P H D H P L T Q I S P L T L E S I A K W P L I T Y R Q G I T G R S R I D D A F A R K G L L A D I V L S A Q D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G T S S S
T T S
T T S T T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D V I K T Y V A L G L G I G L V A E Q S S G E Q E E E N L I R L D T R H L F D A N T V W L G L K R G Q L Q R N Y V W R F L E L C N A G L S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
G G G G S T T
T T
T T T S
T T
S S S

. . . . . . . . . 220

Sequence E D I K R Q V M E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	N	D	T	S	G	V	L	T	I	A	T	T	H	T	Q	A	R	Y	S	L	P	E	V	I	K	A	F	R	E	L	F	P	E	V	R	L	E	L	I	Q	G	T	P	Q	E	I	A	T	L	L	Q	N	G	E	A	D	I	G	I	A	S	E	R	L	S	N	D	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																	T													T	T																				T	S		S					S	S	S	S	T	T		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	A	F	P	W	F	R	W	H	H	S	L	L	V	P	H	D	H	P	L	T	Q	I	S	P	L	T	L	E	S	I	A	K	W	P	L	I	T	Y	R	Q	G	I	T	G	R	S	R	I	D	D	A	F	A	R	K	G	L	L	A	D	I	V	L	S	A	Q	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T		G	G	G	T	S	S	S							T	T	S							T	T	S	T	T											T	T										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	V	I	K	T	Y	V	A	L	G	L	G	I	G	L	V	A	E	Q	S	S	G	E	Q	E	E	E	N	L	I	R	L	D	T	R	H	L	F	D	A	N	T	V	W	L	G	L	K	R	G	Q	L	Q	R	N	Y	V	W	R	F	L	E	L	C	N	A	G	L	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S							G	G	G	G	S	T	T			T	T							T	T	T	S											T	T																S	S	S
	.	.	.	.	.	.	.	.	.	220
Sequence	E	D	I	K	R	Q	V	M	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)