PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3l6gA_

Fold library id	PDB Header	Molecule	Title
c3l6gA_	PDB header: glycine betaine-binding protein	Chain: A: PDB Molecule: betaine abc transporter permease and substrate binding	PDBTitle: crystal structure of lactococcal opuac in its open conformation

Links to external resources
Added to library: Sun Aug 29 08:42:16 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D K K V D L V Y M N W D S E V A S I N V L T Q A M K E H G F D V K T T A L D N A V A W Q T V A N G Q A D G M V S A W L P N T H K T Q W Q K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S S S T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G K S V D L L G P N L K G A K V G F V V P S Y M N V N S I E D L T N Q A N K T I T G I E P G A G V M A A S E K T L N S Y D N L K D W K L V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T S
B G G G
S S G G G G
T T
T T
G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S S S G A M T V A L G E A I K Q H K D I V I T G W S P H W M F N K Y D L K Y L A D P K G T M G T S E N I N T I V R K G L K K E N P E A Y K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T S
B
T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . .

Sequence L D K F N W T T K D M E A V M L D I Q N G K T P E E A A K N W I K D H Q K E V D K W F K G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	H	G	F	D	V	K	T	T	A	L	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S																		T	T																			T	T	S	S	S								T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G																			T	T	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	S	S	G	A	M	T	V	A	L	G	E	A	I	K	Q	H	K	D	I	V	I	T	G	W	S	P	H	W	M	F	N	K	Y	D	L	K	Y	L	A	D	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A	Y	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T										S		T					S						B		T	T		T	T												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Sequence	L	D	K	F	N	W	T	T	K	D	M	E	A	V	M	L	D	I	Q	N	G	K	T	P	E	E	A	A	K	N	W	I	K	D	H	Q	K	E	V	D	K	W	F	K	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T														T						G	G	G	S