PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3kn3C_

Fold library id	PDB Header	Molecule	Title
c3kn3C_	PDB header: transcription	Chain: C: PDB Molecule: putative periplasmic protein;	PDBTitle: crystal structure of lysr substrate binding domain (25-263)2 of putative periplasmic protein from wolinella succinogenes

Links to external resources
Added to library: Sun Aug 29 09:47:10 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A E L R X A T T T S T D N T G L L D V L A P A Y K K D T G V D L K W V A V G T G N A L K L G E N C D V D V V F V H A P K V E L E Y V E K G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G I D R T P V X Y N D F V I I G N P S F K Q K F T G X S V A E A F K L I E K E Q V K F V S R G D K S G T H S K E R E V W K E A L G K I P E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T T T T
T T
S S S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E S W Y I E A G Q G X L A T I N I A E E Q K G L T L T D R G T F I K Y E S N H K G K P P X V I V L E G D N T L K N F Y S I X A V N P K R C E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
B T S
S S
S
G G G
T T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence K A D Y K G A K Q F I D W I V S E K X Q A E I A N F K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	E	L	R	X	A	T	T	T	S	T	D	N	T	G	L	L	D	V	L	A	P	A	Y	K	K	D	T	G	V	D	L	K	W	V	A	V	G	T	G	N	A	L	K	L	G	E	N	C	D	V	D	V	V	F	V	H	A	P	K	V	E	L	E	Y	V	E	K	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																T	T			S					S											T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	I	D	R	T	P	V	X	Y	N	D	F	V	I	I	G	N	P	S	F	K	Q	K	F	T	G	X	S	V	A	E	A	F	K	L	I	E	K	E	Q	V	K	F	V	S	R	G	D	K	S	G	T	H	S	K	E	R	E	V	W	K	E	A	L	G	K	I	P	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		G	G	G	T	T	T	T	T	T													T	T								S	S	S															S	S			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	S	W	Y	I	E	A	G	Q	G	X	L	A	T	I	N	I	A	E	E	Q	K	G	L	T	L	T	D	R	G	T	F	I	K	Y	E	S	N	H	K	G	K	P	P	X	V	I	V	L	E	G	D	N	T	L	K	N	F	Y	S	I	X	A	V	N	P	K	R	C	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T						S												T	T		B														T	S		S	S		S									G	G	G											T	T	T		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	K	A	D	Y	K	G	A	K	Q	F	I	D	W	I	V	S	E	K	X	Q	A	E	I	A	N	F	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S													T	S