PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2q2aD_

Fold library id	PDB Header	Molecule	Title
c2q2aD_	PDB header: transport protein	Chain: D: PDB Molecule: artj;	PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus

Links to external resources
Added to library: Tue Mar 16 13:59:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S G G D G G A T K K K V V V G T D A A F A P F E Y M Q K G K I V G F D V D L L D A V M K A A G L D Y E L K N I G W D P L F A S L Q S K E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S S
B T T T B T T S T T
T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D M G I S G I T I T D E R K Q S Y D F S D P Y F E A T Q V I L V K Q G S P V K N A L D L K G K T I G V Q N A T T G Q E A A E K L F G K G P H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
T T
S
T T
S G G G G T T S
T T S
S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I K K F E T T V V A I M E L L N G G V D A V I T D N A V A N E Y V K N N P N K K L Q V I E D P K N F A S E Y Y G M I F P K N S E L K A K V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S S S
G G G
T T T S
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence E A L K N V I N S G K Y T E I Y K K W F G K E P K L D R L K Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
G G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	G	G	D	G	G	A	T	K	K	K	V	V	V	G	T	D	A	A	F	A	P	F	E	Y	M	Q	K	G	K	I	V	G	F	D	V	D	L	L	D	A	V	M	K	A	A	G	L	D	Y	E	L	K	N	I	G	W	D	P	L	F	A	S	L	Q	S	K	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S		T	T	S	S												B	T	T	T	B				T	T				S													T	T																				T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	M	G	I	S	G	I	T	I	T	D	E	R	K	Q	S	Y	D	F	S	D	P	Y	F	E	A	T	Q	V	I	L	V	K	Q	G	S	P	V	K	N	A	L	D	L	K	G	K	T	I	G	V	Q	N	A	T	T	G	Q	E	A	A	E	K	L	F	G	K	G	P	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		B							T	T					S													T	T					S	G	G	G	G	T	T	S						T	T	S												S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	K	K	F	E	T	T	V	V	A	I	M	E	L	L	N	G	G	V	D	A	V	I	T	D	N	A	V	A	N	E	Y	V	K	N	N	P	N	K	K	L	Q	V	I	E	D	P	K	N	F	A	S	E	Y	Y	G	M	I	F	P	K	N	S	E	L	K	A	K	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S										T	T	S	S	S																	G	G	G								T	T	T	S											T	T		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	E	A	L	K	N	V	I	N	S	G	K	Y	T	E	I	Y	K	K	W	F	G	K	E	P	K	L	D	R	L	K	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T											S	S				G	G	G	G	G