Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3oo6A_

Fold library idPDB HeaderMoleculeTitle
c3oo6A_PDB header: sugar binding proteinChain: A: PDB Molecule: abc transporter binding protein acbh;PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose


Added to library: Wed Jan 5 12:39:50 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GNGPITFGSNYSDEAPKAAFASLMQQATTSTTVPVTVNTTDHNTFQNNISNYLQGTPDSLATWFAGYRLQ
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)

S



S




TS


S
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence FFAAQGLLTPIDDVWDKIGGTFNDAAKSLSKGLDGHYYLVPLYNYPWVVFYNKSVFQSKGYEVPASWEAF
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TTT
B


GGGS
TTB
TTS
B



T




B
 .........150.........160.........170.........180.........190.........200.........210
Sequence IALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDPGVTKVFDQWRELAAY
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTS


TTSSTTT
TTSS
TTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QQKGANGRTWQDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFIL
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) B
SSGGG

TTSS
TTTGGG


B

TTTTT



 .........290.........300.........310.........320.........330.........340.........350
Sequence PKKGKNAAAAKKVLQYIGTAEAEAAFLKTDHWDVGLANGLIAPTYNDIQKKSVAEIGKCKSVSQFMDRDT
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) BTT
S
TSTT

SS

TT


TT

SS

S
 .........360.........370.........380.........390
Sequence VPDMANAMIKLIQQFIDQPTPETIATVQKSAEDQAKTIFR
Predicted secondary structure






SS confidence







































Known secondary structure (DSSP)


ST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D