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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2v84A_

Fold library idPDB HeaderMoleculeTitle
c2v84A_PDB header: transport proteinChain: A: PDB Molecule: spermidine/putrescine abc transporter,PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum


Added to library: Tue Mar 16 12:26:33 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DVLYLYNWTYYTPTSLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLE
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Known secondary structure (DSSP)
TTTS
T
S
SSS

S
S

BTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KIDLSKIPNVQFIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKDLAYRMSMMD
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Known secondary structure (DSSP)


GGG
GGGGGB

TTSTT
SS


TTT

S

SSGGGGG
GGGTTS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence DMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAE
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Known secondary structure (DSSP)
TT

TT


TGGG
SSSTS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREAAA
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Known secondary structure (DSSP) S
GGGGGG

TTTT
BTT
S
TST


SSBTTGGG
 .........290.........300.........310.........
Sequence YQKKTPYYSEHDLERGTLKTDVGAAIEHYNAHWNAVRFR
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Known secondary structure (DSSP) G

S

SS
GGGGSSS



GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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