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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3k6wA_

Fold library idPDB HeaderMoleculeTitle
c3k6wA_PDB header: transport proteinChain: A: PDB Molecule: solute-binding protein ma_0280;PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans


Added to library: Sat Aug 28 23:48:56 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADYALIPSLMVPE
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Known secondary structure (DSSP)

GGG
TT


TS



SSSTTTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YADWYAAFARNQMILAYTNESKYGDEINTDNWYEILRRPDVRYGFSNPNDDPAGYRSQMVTQLAESYYND
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Known secondary structure (DSSP) T
S



TTSTTTTS

TTTSTT


TTT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DMIYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAE
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Known secondary structure (DSSP) TTTTTTSS

TTS



GGGS


TTTSSGGGSTTS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence QHGFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETG
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Known secondary structure (DSSP) T



TTTSS

GGGTT
TTS






TT
SSS
 .........290.........300.........310..
Sequence QQIFIENGQPPIVPAIAEGKDSMPEELQALVV
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Known secondary structure (DSSP) TT


TTTS
TTB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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