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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3ombA_

Fold library idPDB HeaderMoleculeTitle
c3ombA_PDB header: transport proteinChain: A: PDB Molecule: extracellular solute-binding protein, family 1;PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis


Added to library: Sat Sep 18 09:20:15 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TTTADGKPIVTVLVKKNANQEKXANXQWAKDLEADCDCKIEWQEVTREAWAQQKNATLASGDIADVNLNG
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Known secondary structure (DSSP)
B
TT

B
TTB

GGG
TST


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YGAVEAYQYPGXFEDLSKDLDKLPNVKAFFKQKPDAKKXSTDSKGRIYAIADGRGKAYSGTGQHXLINKA
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Known secondary structure (DSSP)

TSTTSB

GGGGGGG



TTS

SS

GGG
S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence WLDKLGLQVPTTWDELENVLKAFKTQDPNGNGQADEIPXNIKKLEGSYFTWYSPXLLLNSTGIVTGFNKG
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Known secondary structure (DSSP) T




BS
TT
SSSS







SSS

TT
GGGGGGGGT



TTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VSEYGFYAKNGVVKSFLTSDEYKEVIKYYHKLISEGLIPAEWATKDDDAYNADQISDGKTAKTGVVFGWS
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Known secondary structure (DSSP) GGGGTTTGGGSTTSS
TTGGG

TTSSS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence PSDNFGKLKDQYIAXPVPSAPGVSPDQTVWDGSSSELSPAGLSISSHAANKDAALKLANLLYSEKYSVQQ
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Known secondary structure (DSSP) GGGGGG



B
TT

GGG






SSBTT
TTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FLGSFGKAITKTGEHEYTVDNDKLSQLTGDNQYPGLSELLVGWIPDEATIKGDTHADELIEVNKVYEEQR
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Known secondary structure (DSSP)
SBTTTTT
TT
BSS
GGG

SB

TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence SHFDPVKDYIPDYVNXDNXDPSDATKLNTNNAEIFNTTXQKTATWXSKGGIDEEWDAYCKQLDSIGLQES
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Known secondary structure (DSSP) TTS
TTTTS

TT
SGGGS
TTT

TT
 .........500...
Sequence TKIWQKWYDTYTK
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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