PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mz1D_

Fold library id	PDB Header	Molecule	Title
c3mz1D_	PDB header: transcription regulator	Chain: D: PDB Molecule: putative transcriptional regulator;	PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021

Links to external resources
Added to library: Sat Aug 28 21:08:02 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P K G R L R V E T A S A F A N L V I I P A L P E F H K K Y P D I Q I D L G V S D R T I D Y L A E N V D C A I R A G T L T D Q S L I A R R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
T T
T T
S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T E X K F V A C A S R D F L E R H P V P Q H P S D L E K N C Y V V G Y F L P K T G Q Q X P F H F R R G N E E I E V S G R Y T X A A N E S T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S G G G G G T T S
T T T T
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y L A A A R A G L G V I Q A P L F X V R E D L R N G T X V P V L P D W Q V E P X P I Y L V Y P P N R H L S S R L R V F A D W V V K V X A Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B T S
T T
B
G G G T T

. .

Sequence Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	K	G	R	L	R	V	E	T	A	S	A	F	A	N	L	V	I	I	P	A	L	P	E	F	H	K	K	Y	P	D	I	Q	I	D	L	G	V	S	D	R	T	I	D	Y	L	A	E	N	V	D	C	A	I	R	A	G	T	L	T	D	Q	S	L	I	A	R	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T													T	T												T	T				T	T								S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	E	X	K	F	V	A	C	A	S	R	D	F	L	E	R	H	P	V	P	Q	H	P	S	D	L	E	K	N	C	Y	V	V	G	Y	F	L	P	K	T	G	Q	Q	X	P	F	H	F	R	R	G	N	E	E	I	E	V	S	G	R	Y	T	X	A	A	N	E	S	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S				S	S	G	G	G	G	G	T	T	S								T	T	T	T										T	T														S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	L	A	A	A	R	A	G	L	G	V	I	Q	A	P	L	F	X	V	R	E	D	L	R	N	G	T	X	V	P	V	L	P	D	W	Q	V	E	P	X	P	I	Y	L	V	Y	P	P	N	R	H	L	S	S	R	L	R	V	F	A	D	W	V	V	K	V	X	A	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T			B															T	S						T	T		B												G	G	G	T	T
	.	.
Sequence	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T