Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP31434
DateThu Jan 5 11:47:24 GMT 2012
Unique Job ID9d24d38e7c8bffef

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1xsiF_
Top template information
PDB header:hydrolase
Chain: F: PDB Molecule:putative family 31 glucosidase yici;
PDBTitle: structure of a family 31 alpha glycosidase
Confidence and coverage
Confidence:100.0% Coverage:100%
772 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSP
Secondary structure 
SS confidence 
Disorder  ???????
?
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEFWSL
Secondary structure 
SS confidence 
Disorder 
???????
??
??
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVE
Secondary structure 
SS confidence 
Disorder 
???
???
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYF
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  VIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPL
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  HVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYIGQKSPVFKEL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGER
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  IPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLH
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  GSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPA
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  CDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  VYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTG
Secondary structure 
SS confidence 
Disorder 
?????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770..
Sequence  NTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL
Secondary structure 
SS confidence 
Disorder 
???
?
?
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1xsi chain F

3D model

Region: 1 - 772
Aligned: 772
Modelled: 772
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: F: PDB Molecule:putative family 31 glucosidase yici;
PDBTitle: structure of a family 31 alpha glycosidase

Phyre2

PDB 3top chain A

3D model

Region: 8 - 772
Aligned: 729
Modelled: 760
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the c-terminal subunit of human maltase-2 glucoamylase in complex with acarbose

Phyre2

PDB 3lpp chain A

3D model

Region: 7 - 771
Aligned: 732
Modelled: 752
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:sucrase-isomaltase;
PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol

Phyre2

PDB 2qmj chain A

3D model

Region: 7 - 771
Aligned: 733
Modelled: 758
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose

Phyre2

PDB 2xvg chain A

3D model

Region: 19 - 771
Aligned: 728
Modelled: 750
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha xylosidase;
PDBTitle: crystal structure of alpha-xylosidase (gh31) from2 cellvibrio japonicus

Phyre2

PDB 2g3n chain A

3D model

Region: 100 - 717
Aligned: 604
Modelled: 617
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside

Phyre2

PDB 2x2i chain B

3D model

Region: 19 - 772
Aligned: 734
Modelled: 754
Confidence: 100.0%
Identity: 19%
PDB header:lyase
Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1;
PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose

Phyre2

PDB 3ffj chain A

3D model

Region: 146 - 713
Aligned: 557
Modelled: 559
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase (family 31);
PDBTitle: the crystal structure of the glycosyl hydrolase (family 31) from2 ruminococcus obeum atcc 29174

Phyre2

PDB 2f2h chain A domain 4

3D model

Region: 248 - 585
Aligned: 338
Modelled: 338
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: YicI catalytic domain-like

Phyre2

PDB 2f2h chain A domain 2

3D model

Region: 1 - 247
Aligned: 247
Modelled: 247
Confidence: 100.0%
Identity: 100%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: YicI N-terminal domain-like

Phyre2

PDB 1zy9 chain A

3D model

Region: 97 - 566
Aligned: 431
Modelled: 446
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution

Phyre2

PDB 2yfn chain A

3D model

Region: 63 - 646
Aligned: 531
Modelled: 576
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask

Phyre2

PDB 2xn1 chain B

3D model

Region: 64 - 664
Aligned: 558
Modelled: 588
Confidence: 99.9%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris

Phyre2

PDB 2f2h chain A domain 3

3D model

Region: 586 - 665
Aligned: 80
Modelled: 80
Confidence: 99.9%
Identity: 100%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: Putative glucosidase YicI, domain 3

Phyre2

PDB 1zy9 chain A domain 2

3D model

Region: 278 - 487
Aligned: 196
Modelled: 208
Confidence: 99.9%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: YicI catalytic domain-like

Phyre2

PDB 3mi6 chain A

3D model

Region: 18 - 575
Aligned: 520
Modelled: 542
Confidence: 99.8%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.

Phyre2

PDB 3cc1 chain B

3D model

Region: 251 - 511
Aligned: 232
Modelled: 247
Confidence: 99.7%
Identity: 13%
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution

Phyre2

PDB 2f2h chain A domain 1

3D model

Region: 666 - 772
Aligned: 107
Modelled: 107
Confidence: 99.6%
Identity: 100%
Fold: Putative glucosidase YicI, C-terminal domain
Superfamily: Putative glucosidase YicI, C-terminal domain
Family: Putative glucosidase YicI, C-terminal domain

Phyre2

PDB 1uas chain A domain 2

3D model

Region: 259 - 511
Aligned: 197
Modelled: 203
Confidence: 99.6%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1uas chain A

3D model

Region: 259 - 515
Aligned: 201
Modelled: 207
Confidence: 99.5%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase

Phyre2
1
c1xsiF_
2
c3topA_
3
c3lppA_
4
c2qmjA_
5
c2xvgA_
6
c2g3nA_
7
c2x2iB_
8
c3ffjA_
9
d2f2ha4
10
d2f2ha2
11
c1zy9A_
12
c2yfnA_
13
c2xn1B_
14
d2f2ha3
15
d1zy9a2
16
c3mi6A_
17
c3cc1B_
18
d2f2ha1
19
d1uasa2
20
c1uasA_
21
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1xsiF_
100.0 100 PDB header:hydrolase
Chain: F: PDB Molecule:putative family 31 glucosidase yici;
PDBTitle: structure of a family 31 alpha glycosidase
2c3topA_
100.0 20 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the c-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
3c3lppA_
100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:sucrase-isomaltase;
PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol
4c2qmjA_
100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
5c2xvgA_
100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:alpha xylosidase;
PDBTitle: crystal structure of alpha-xylosidase (gh31) from2 cellvibrio japonicus
6c2g3nA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside
7c2x2iB_
100.0 19 PDB header:lyase
Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1;
PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose
8c3ffjA_
100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase (family 31);
PDBTitle: the crystal structure of the glycosyl hydrolase (family 31) from2 ruminococcus obeum atcc 29174
9d2f2ha4
100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
10d2f2ha2
100.0 100 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:YicI N-terminal domain-like
11c1zy9A_
100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution
12c2yfnA_
100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
13c2xn1B_
99.9 14 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
14d2f2ha3
99.9 100 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Putative glucosidase YicI, domain 3
15d1zy9a2
99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
16c3mi6A_
99.8 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
17c3cc1B_
99.7 13 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution
18d2f2ha1
99.6 100 Fold:Putative glucosidase YicI, C-terminal domain
Superfamily:Putative glucosidase YicI, C-terminal domain
Family:Putative glucosidase YicI, C-terminal domain
19d1uasa2
99.6 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
20c1uasA_
99.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
21d1szna2
not modelled 99.5 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
22d1r46a2
not modelled 99.3 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
23c3a5vA_
not modelled 99.3 21 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea
24c3lrmB_
not modelled 99.2 16 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase 1;
PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose
25c3a23A_
not modelled 99.2 14 PDB header:hydrolase
Chain: A: PDB Molecule:putative secreted alpha-galactosidase;
PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose
26c1r46B_
not modelled 99.2 20 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase a;
PDBTitle: structure of human alpha-galactosidase
27c1t0oA_
not modelled 99.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose
28c1ktbA_
not modelled 99.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: the structure of alpha-n-acetylgalactosaminidase
29d1ktba2
not modelled 99.1 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
30c3dhuC_
not modelled 98.9 16 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
31c2wskA_
not modelled 98.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
32c1jibA_
not modelled 98.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
33c1jd7A_
not modelled 98.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
34c1gviA_
not modelled 98.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
35c1bagA_
not modelled 98.1 12 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
36c3czkA_
not modelled 98.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
37c1lwhA_
not modelled 97.9 15 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
38d1g5aa2
not modelled 97.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
39d1ua7a2
not modelled 97.8 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
40d1m53a2
not modelled 97.8 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
41c3ucqA_
not modelled 97.8 14 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis
42d1gvia3
not modelled 97.8 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
43c1jgiA_
not modelled 97.8 18 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
44c1jdaA_
not modelled 97.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
45d1ea9c3
not modelled 97.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
46c2wcsA_
not modelled 97.8 10 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
47c1wzaA_
not modelled 97.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
48d1gcya2
not modelled 97.8 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
49c2z1kA_
not modelled 97.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
50c1zjaB_
not modelled 97.8 14 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
51d1uoka2
not modelled 97.7 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
52c1m53A_
not modelled 97.7 11 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
53d1lwha2
not modelled 97.7 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
54c1gcyA_
not modelled 97.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
55d1j0ha3
not modelled 97.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
56c1cygA_
not modelled 97.7 18 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
57c2zidA_
not modelled 97.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
58c2ze0A_
not modelled 97.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
59c1uokA_
not modelled 97.6 13 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
60c1tcmB_
not modelled 97.6 16 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
61d1h3ga3
not modelled 97.6 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
62c1jaeA_
not modelled 97.6 11 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
63c2wanA_
not modelled 97.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
64c1ehaA_
not modelled 97.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
65c1qhoA_
not modelled 97.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
66c3zt5D_
not modelled 97.5 17 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
67c3a47A_
not modelled 97.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
68d1avaa2
not modelled 97.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
69d1ht6a2
not modelled 97.4 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
70c3edeB_
not modelled 97.4 11 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
71d1wzaa2
not modelled 97.4 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
72d1wzla3
not modelled 97.4 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
73c2vncB_
not modelled 97.3 13 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
74c1ea9D_
not modelled 97.3 12 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
75c3faxA_
not modelled 97.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
76c2e8yA_
not modelled 97.3 18 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
77d1jaea2
not modelled 97.3 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
78c2qpuB_
not modelled 97.3 12 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
79d2bhua3
not modelled 97.2 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
80c2aaaA_
not modelled 97.2 15 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
81d1qhoa4
not modelled 97.2 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
82c3bmwA_
not modelled 97.2 16 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
83d1eh9a3
not modelled 97.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
84d1cyga4
not modelled 97.2 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
85c2taaA_
not modelled 97.2 16 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
86c3m07A_
not modelled 97.1 12 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
87d1m7xa3
not modelled 97.1 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
88d2aaaa2
not modelled 97.1 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89c2ya0A_
not modelled 97.1 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
90d1pama4
not modelled 97.1 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
91c1bf2A_
not modelled 97.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
92c1e40A_
not modelled 97.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
93d2guya2
not modelled 97.1 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
94c1hvxA_
not modelled 97.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
95c3blpX_
not modelled 97.0 16 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
96d3bmva4
not modelled 97.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97c2ya1A_
not modelled 97.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
98d1bf2a3
not modelled 97.0 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
99d1cxla4
not modelled 96.9 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
100c2dh3A_
not modelled 96.9 15 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
101c1wpcA_
not modelled 96.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
102c2by0A_
not modelled 96.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
103c3k1dA_
not modelled 96.9 18 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
104d1cgta4
not modelled 96.8 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
105c2x4bA_
not modelled 96.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
106d3dhpa2
not modelled 96.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
107d1g94a2
not modelled 96.6 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
108d1hx0a2
not modelled 96.6 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
109c2aamA_
not modelled 96.6 9 PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein tm1410;
PDBTitle: crystal structure of a putative glycosidase (tm1410) from thermotoga2 maritima at 2.20 a resolution
110d2aama1
not modelled 96.6 9 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:TM1410-like
111c1m7xC_
not modelled 96.5 19 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
112c3amkA_
not modelled 96.4 10 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
113c1ud8A_
not modelled 96.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
114c3amlA_
not modelled 96.3 11 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
115d2fhfa5
not modelled 96.3 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
116d1hvxa2
not modelled 96.3 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
117c2fhfA_
not modelled 96.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
118d2gjpa2
not modelled 96.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
119d1ud2a2
not modelled 95.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
120c3k8kB_
not modelled 95.3 33 PDB header:membrane protein
Chain: B: PDB Molecule:alpha-amylase, susg;
PDBTitle: crystal structure of susg

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0