Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1bagA_

Fold library idPDB HeaderMoleculeTitle
c1bagA_PDB header: alpha-amylaseChain: A: PDB Molecule: alpha-1,4-glucan-4-glucanohydrolase;PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose


Added to library: Tue Mar 16 13:27:28 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LTAPSIKSGTILHAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIG
Predicted secondary structure















































SS confidence





































































Known secondary structure (DSSP)


SSGGGS

TTB
TTT
S
S



TGGG


GGGGGGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence NRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNS
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP) TTTTTT


SB

S
GGGS
TSTT


B


TT
SB
 .........150.........160.........170.........180.........190.........200.........210
Sequence LLGLYDWNTQNTQVQSYLKRFLERALNDGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGQIL
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) STT


TT
T

TTGGGS

TTSGGG

ST
SS
S


 .........220.........230.........240.........250.........260.........270.........280
Sequence QDSASRDAAYANYMDVTASNYGHSIRSALKNRNLGVSNISHYASDVSADKLVTWVESHDTYANDDEESTW
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
STTS
TTTS
T


TTTTTS
SSSS
GGG
S

STT
TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence MSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPE
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)

TTSSS



TT
BTTBS

SSS
TBS


GGGG
TTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence ELSNPNGNNQIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQVNDGKLTGTINARSVA
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)

GGG
TTTTT
SSS

SS
S
SSSS

SS
TT
 .....
Sequence VLYPD
Predicted secondary structure

SS confidence




Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D