Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1hvxA_

Fold library idPDB HeaderMoleculeTitle
c1hvxA_PDB header: hydrolaseChain: A: PDB Molecule: alpha-amylase;PDBTitle: bacillus stearothermophilus alpha-amylase


Added to library: Tue Mar 16 13:22:28 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AAPFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQ
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)









TT

SSS
TT




SSSTT

SSSTT
SS
S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence KGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWT
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP) TTBSS
SS

TT


S


STT
S

 .........150.........160.........170.........180.........190.........200.........210
Sequence KFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPE
Predicted secondary structure

































































SS confidence





































































Known secondary structure (DSSP) B

TTTTTSS



B
GGGTTTT
STT



SS


TTS




SS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKT
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)


TTGGGS
TT







S
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence NGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLA
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TT
S
TTT
S
GGGTTTT

GGGS

TTTSTTSTT




TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence YAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRDYAYGTQHDYLDHSDIIGWTREGVTEKP
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) SSSS
BGGGTB


T

S


SSS

BTTBT
 .........430.........440.........450.........460.........470.........480...
Sequence GSGLAALITDGPGGSKWMYVGKQHAGKVFYDLTGNRSDTVTINSDGWGEFKVNGGSVSVWVPR
Predicted secondary structure



























SS confidence






























































Known secondary structure (DSSP) T

SSS


GGGTT
TTSS




TTS
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D