Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	D	D	F	A	P	D	G	Q	L	A	K	A	I	P	G	F	K	P	R	E	P	Q	R	Q	M	A	V	A	V	T	Q	A	I	E	K	G	Q	P	L	V	V	E	A	G	T	G	T	G	K	T	Y	A	Y	L	A	P	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	A	K	K	K	V	I	I	S	T	G	S	K	A	L	Q	D	Q	L	Y	S	R	D	L	P	T	V	S	K	A	L	K	Y	T	G	N	V	A	L	L	K	G	R	S	N	Y	L	C	L	E	R	L	E	Q	Q	A	L	A	G	G
Secondary structure
SS confidence
Disorder																																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	L	P	V	Q	I	L	S	D	V	I	L	L	R	S	W	S	N	Q	T	V	D	G	D	I	S	T	C	V	S	V	A	E	D	S	Q	A	W	P	L	V	T	S	T	N	D	N	C	L	G	S	D	C	P	M	Y	K	D	C	F
Secondary structure
SS confidence
Disorder		?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	V	K	A	R	K	K	A	M	D	A	D	V	V	V	V	N	H	H	L	F	L	A	D	M	V	V	K	E	S	G	F	G	E	L	I	P	E	A	D	V	M	I	F	D	E	A	H	Q	L	P	D	I	A	S	Q	Y	F	G	Q
Secondary structure
SS confidence
Disorder																														?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	L	S	S	R	Q	L	L	D	L	A	K	D	I	T	I	A	Y	R	T	E	L	K	D	T	Q	Q	L	Q	K	C	A	D	R	L	A	Q	S	A	Q	D	F	R	L	Q	L	G	E	P	G	Y	R	G	N	L	R	E	L	L	A
Secondary structure
SS confidence
Disorder																								?	?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	P	Q	I	Q	R	A	F	L	L	L	D	D	T	L	E	L	C	Y	D	V	A	K	L	S	L	G	R	S	A	L	L	D	A	A	F	E	R	A	T	L	Y	R	T	R	L	K	R	L	K	E	I	N	Q	P	G	Y	S	Y	W
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Y	E	C	T	S	R	H	F	T	L	A	L	T	P	L	S	V	A	D	K	F	K	E	L	M	A	Q	K	P	G	S	W	I	F	T	S	A	T	L	S	V	N	D	D	L	H	H	F	T	S	R	L	G	I	E	Q	A	E	S	L
Secondary structure
SS confidence
Disorder																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	L	P	S	P	F	D	Y	S	R	Q	A	L	L	C	V	L	R	N	L	P	Q	T	N	Q	P	G	S	A	R	Q	L	A	A	M	L	R	P	I	I	E	A	N	N	G	R	C	F	M	L	C	T	S	H	A	M	M	R	D	L
Secondary structure
SS confidence
Disorder																					?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		A	E	Q	F	R	A	T	M	T	L	P	V	L	L	Q	G	E	T	S	K	G	Q	L	L	Q	Q	F	V	S	A	G	N	A	L	L	V	A	T	S	S	F	W	E	G	V	D	V	R	G	D	T	L	S	L	V	I	I	D	K	L
Secondary structure
SS confidence
Disorder																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		P	F	T	S	P	D	D	P	L	L	K	A	R	M	E	D	C	R	L	R	G	G	D	P	F	D	E	V	Q	L	P	D	A	V	I	T	L	K	Q	G	V	G	R	L	I	R	D	A	D	D	R	G	V	L	V	I	C	D	N	R
Secondary structure
SS confidence
Disorder																					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Sequence		L	V	M	R	P	Y	G	A	T	F	L	A	S	L	P	P	A	P	R	T	R	D	I	A	R	A	V	R	F	L	A	I	P	S	S	R
Secondary structure
SS confidence
Disorder																					?											?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vsf chain A Region: 41 - 636 Aligned: 574 Modelled: 596 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:dna repair helicase rad3 related protein; PDBTitle: structure of xpd from thermoplasma acidophilum Phyre2 PDB 2vl7 chain A Region: 21 - 603 Aligned: 440 Modelled: 468 Confidence: 100.0% Identity: 22% PDB header:unknown function Chain: A: PDB Molecule:xpd; PDBTitle: structure of s. tokodaii xpd4 Phyre2 PDB 3crw chain 1 Region: 26 - 616 Aligned: 468 Modelled: 499 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo" Phyre2 PDB 2v1x chain B Region: 11 - 597 Aligned: 330 Modelled: 353 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase Phyre2 PDB 1oyw chain A Region: 11 - 598 Aligned: 322 Modelled: 342 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase; PDBTitle: structure of the recq catalytic core Phyre2 PDB 1c4o chain A Region: 4 - 595 Aligned: 464 Modelled: 496 Confidence: 99.9% Identity: 17% PDB header:replication Chain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb; PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus Phyre2 PDB 2xgj chain A Region: 15 - 616 Aligned: 341 Modelled: 368 Confidence: 99.9% Identity: 23% PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance Phyre2 PDB 1gl9 chain B Region: 19 - 541 Aligned: 280 Modelled: 298 Confidence: 99.9% Identity: 18% PDB header:topoisomerase Chain: B: PDB Molecule:reverse gyrase; PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp Phyre2 PDB 1gm5 chain A Region: 11 - 599 Aligned: 311 Modelled: 339 Confidence: 99.9% Identity: 24% PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Phyre2 PDB 3l9o chain A Region: 15 - 616 Aligned: 337 Modelled: 354 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Phyre2 PDB 2eyq chain A Region: 5 - 599 Aligned: 322 Modelled: 351 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Phyre2 PDB 2va8 chain A Region: 19 - 597 Aligned: 311 Modelled: 333 Confidence: 99.9% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 Phyre2 PDB 3tmi chain A Region: 16 - 600 Aligned: 413 Modelled: 423 Confidence: 99.8% Identity: 19% PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i Phyre2 PDB 4a4z chain A Region: 15 - 616 Aligned: 341 Modelled: 357 Confidence: 99.8% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp Phyre2 PDB 1wp9 chain D Region: 18 - 608 Aligned: 380 Modelled: 395 Confidence: 99.8% Identity: 20% PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase, putative; PDBTitle: crystal structure of pyrococcus furiosus hef helicase domain Phyre2 PDB 3oiy chain B Region: 17 - 599 Aligned: 333 Modelled: 364 Confidence: 99.8% Identity: 22% PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima Phyre2 PDB 3ews chain A Region: 17 - 597 Aligned: 318 Modelled: 340 Confidence: 99.8% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: human dead-box rna-helicase ddx19 in complex with adp Phyre2 PDB 2d7d chain A Region: 10 - 596 Aligned: 469 Modelled: 497 Confidence: 99.8% Identity: 16% PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb Phyre2 PDB 2p6u chain A Region: 19 - 616 Aligned: 332 Modelled: 362 Confidence: 99.8% Identity: 25% PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Phyre2 PDB 2fsg chain A Region: 17 - 597 Aligned: 355 Modelled: 380 Confidence: 99.8% Identity: 18% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Phyre2 PDB 2fwr chain A domain 2 Region: 1 - 230 Aligned: 129 Modelled: 129 Confidence: 99.1% Identity: 22% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 1 c2vsfA_ 2 c2vl7A_ 3 c3crw1_ 4 c2v1xB_ 5 c1oywA_ 6 c1c4oA_ 7 c2xgjA_ 8 c1gl9B_ 9 c1gm5A_ 10 c3l9oA_ 11 c2eyqA_ 12 c2va8A_ 13 c3tmiA_ 14 c4a4zA_ 15 c1wp9D_ 16 c3oiyB_ 17 c3ewsA_ 18 c2d7dA_ 19 c2p6uA_ 20 c2fsgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 d2fwra2 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499