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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4a4zA_

Fold library idPDB HeaderMoleculeTitle
c4a4zA_PDB header: hydrolaseChain: A: PDB Molecule: antiviral helicase ski2;PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp


Added to library: Sat Dec 24 22:33:46 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA
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Known secondary structure (DSSP)


S

TT


TT
SS
S


SS


TT


TTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence HRNMTKTIYTSPIKALSNQKFRDFKETFVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEF
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Known secondary structure (DSSP) TT
S
GGGTT



SS

TTSST
SGGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence VIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEI
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Known secondary structure (DSSP)

TT


TT
TT

S
TT



TTT


SS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADW
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Known secondary structure (DSSP) TT
TT

B





TTTT

S
S
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence LEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF
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Known secondary structure (DSSP) TTT




TTS
T
TTT
TTS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLS
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Known secondary structure (DSSP)
S
TS




SS
STT

GGG

TTT
SS

SS


 .........430.........440.........450.........460.........470.........480.........490
Sequence IATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQT
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Known secondary structure (DSSP) S












TTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTTKPYKY
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Known secondary structure (DSSP)
TTSTTT
TT
TT

TTTT






 .........570.........580.........590.........600.........610.........620.........630
Sequence FPKADGYRRRNFPKFQKTDFYMEEVPVTIEVITKRKFAPLGKVIKKDVAALNEFNAETNNILDGKTLKEA
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Known secondary structure (DSSP)
TT

















T
S





 .........640.........650.........660.........670.........680.........690.........700
Sequence GLKIHQILLDRTNIRDESQHIVPKFKAHVIKKKIEELYHLMSDSLLPDYEKRLAVLKDTEFIDQNHNVLL
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Known secondary structure (DSSP)




STTT

TTSB
TT

B
 .........710.........720.........730.........740.........750.........760.........770
Sequence KGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYK
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Known secondary structure (DSSP) TT

SS
SSGGGG

GGGS




SS




SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence KMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVK
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Known secondary structure (DSSP) TT



GGGS
TTTTT

T
SS
 .........850.........860.........870....
Sequence TASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL
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Known secondary structure (DSSP) T
S
GGGG


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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