Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3i5yA_

Fold library idPDB HeaderMoleculeTitle
c3i5yA_PDB header: hydrolase/rnaChain: A: PDB Molecule: atp-dependent rna helicase mss116;PDBTitle: structure of mss116p bound to ssrna containing a single 5-2 bru and amp-pnp


Added to library: Sat Aug 28 19:26:29 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTG
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)



SS




TSS
TT

SS


SS


TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTTSSTTS


SST
GGGGGS

TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSAD
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)

S

TT

TTSTTT
SS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence NIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

SS

TTGGG

SSSS
SSS
SS
TTSSST
 .........290.........300.........310.........320.........330.........340.........350
Sequence KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) TTT


SSTTTS
STTS

SS
GGGT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEP
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) SS


TT

S

SSTTTSS
TT

GGG






 .........430.........440.........450.........460.........470.........480.........490
Sequence SEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFL
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP)




TTTTTT

TTT
TT


 .........500.........
Sequence DKLGLSRSPIGKAMFEIRD
Predicted secondary structure













SS confidence


















Known secondary structure (DSSP) T
TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D