Phyre 2 alignment of P76257 with c1s3sA_

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Job Description | P76257
Confidence | 81.95% | Date | Thu Jan 5 12:21:18 GMT 2012
Rank | 326 | Aligned Residues | 31
% Identity | 23% | Template | c1s3sA_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter | PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | Q | P | L | V | V | E | A | G | T | G | T | G | K | T | Y | A | Y | L | A | P | A | L | R | A | K | K | K | V | I | I | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | G | I | L | L | Y | G | P | P | G | T | G | K | T | L | I | A | R | A | V | A | N | E | T | G | A | F | F | F | L | I
Template Known Secondary structure |  |  |  |  |  |  |  |  | S | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 239 | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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