Phyre 2 alignment of P76257 with c1qzwC_

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Job Description | P76257
Confidence | 67.07% | Date | Thu Jan 5 12:21:18 GMT 2012
Rank | 466 | Aligned Residues | 34
% Identity | 24% | Template | c1qzwC_
PDB info | PDB header:signaling protein/rna | Chain: C: PDB Molecule:signal recognition 54 kda protein; | PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
Resolution | 4.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . |  |  | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | P | L | V | V | E | A | G | T | G | T | G | K | T | . | . | Y | A | Y | L | A | P | A | L | R | A | K | K | K | V | I | I | S | T | G | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | I | I | M | L | V | G | V | Q | G | S | G | K | T | T | T | A | G | K | L | A | Y | F | Y | K | K | R | G | Y | K | V | G | L | V | A | A
Template Known Secondary structure |  |  |  |  |  |  |  |  | S | S | S | S | S | S | T | T | T |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | B |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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