09/01/2012 15:00:16 : INFO  : Run start: Mon Jan  9 15:00:15 GMT 2012
09/01/2012 15:00:21 : INFO  : Initialised job
09/01/2012 15:00:22 : INFO  : Renaming log file 'phyre2_20120109_150014.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/2922bfa50bfddb5c/phyre_20120109_150014.log'
09/01/2012 15:00:23 : INFO  : Initialised job:
Sequence
>batch____
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL
RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG
DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF
VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ
SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW
YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL
LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL
AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL
PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR

09/01/2012 15:00:24 : INFO  : Checked sequence
09/01/2012 15:00:27 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 15:00:27 : INFO  : PSI-BLAST 3 iterations
09/01/2012 15:03:12 : INFO  : PSI-BLAST 5 iterations
09/01/2012 15:06:05 : INFO  : Finished PSI-BLAST
09/01/2012 15:06:07 : INFO  : Running Buildali to generate a3m file
09/01/2012 15:20:36 : INFO  : Converting to HMM
09/01/2012 15:20:45 : INFO  : Calibrating HMM
09/01/2012 15:21:06 : INFO  : Searching HMM database
09/01/2012 15:31:50 : INFO  : Finished buildali
09/01/2012 15:31:52 : INFO  : Predicting secondary structure
09/01/2012 15:31:59 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 15:32:00 : INFO  : Predicting Disordered regions
09/01/2012 15:32:04 : INFO  : Predicted Disorder (Disopred)
09/01/2012 15:32:05 : INFO  : Running memsat_svm check
09/01/2012 15:34:06 : INFO  : Globular protein
09/01/2012 15:34:07 : INFO  : Predicted Transmembrane (memsat_svm) ID '2922bfa50bfddb5c'
09/01/2012 15:34:08 : INFO  : Initialising fold library search
09/01/2012 15:34:11 : INFO  : Initialised search input
09/01/2012 15:34:13 : INFO  : Building Ensemble models
09/01/2012 15:34:16 : INFO  : Building hh.c2vsfA_.model.1.pdb
09/01/2012 15:34:29 : INFO  : Building hh.d2fwra2.model.2.pdb
09/01/2012 15:34:40 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/2922bfa50bfddb5c/hh.d2fwra2.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/2922bfa50bfddb5c/d2fwra2.70.pdb
09/01/2012 15:34:44 : INFO  : Building c2vsfA_.1.pdb
09/01/2012 15:34:56 : INFO  : Building c2vl7A_.2.pdb
09/01/2012 15:35:08 : INFO  : Building c3crw1_.3.pdb
09/01/2012 15:35:21 : INFO  : Building c2v1xB_.4.pdb
09/01/2012 15:35:34 : INFO  : Building c1oywA_.5.pdb
09/01/2012 15:35:46 : INFO  : Building c1c4oA_.6.pdb
09/01/2012 15:35:59 : INFO  : Building c2xgjA_.7.pdb
09/01/2012 15:36:11 : INFO  : Building c1gl9B_.8.pdb
09/01/2012 15:36:22 : INFO  : Building c1gm5A_.9.pdb
09/01/2012 15:36:34 : INFO  : Building c3l9oA_.10.pdb
09/01/2012 15:36:48 : INFO  : Building c2eyqA_.11.pdb
09/01/2012 15:37:00 : INFO  : Building c2va8A_.12.pdb
09/01/2012 15:37:14 : INFO  : Building c3tmiA_.13.pdb
09/01/2012 15:37:27 : INFO  : Building c4a4zA_.14.pdb
09/01/2012 15:37:40 : INFO  : Building c1wp9D_.15.pdb
09/01/2012 15:37:52 : INFO  : Building c3oiyB_.16.pdb
09/01/2012 15:38:04 : INFO  : Building c3ewsA_.17.pdb
09/01/2012 15:38:17 : INFO  : Building c2d7dA_.18.pdb
09/01/2012 15:38:30 : INFO  : Building c2p6uA_.19.pdb
09/01/2012 15:38:43 : INFO  : Building c2fsgA_.20.pdb
09/01/2012 15:39:29 : INFO  : Finished HH model building
09/01/2012 15:39:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 15:40:28 : INFO  : html domain output complete ID '2922bfa50bfddb5c'
09/01/2012 19:34:37 : INFO  : Run end  : Mon Jan  9 19:34:36 GMT 2012
