PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1gkub2

Fold library id	Fold	Superfamily	Family
d1gkub2	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Helicase-like "domain" of reverse gyrase

Links to external resources
Added to library: Tue Mar 16 13:57:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V R N V E D V A V N D E S I S T L S S I L E K L G T G G I I Y A R T G E E A E E I Y E S L K N K F R I G I V T A T K K G D Y E K F V E G E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T T S
S
S S T T T T S S
T T S S S T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D H L I G T A H R G L D L P E R I R F A V F V G C P S F R V T I E D I D S L S P Q M V K L L A Y L Y R N V D E I E R L L P A V E R H I D E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T T
S
S
G G G S
T T T S
T T
T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R E I L K K V M G K E R P Q A K D V V V R E G E V I F P D L R T Y I Q G S G R T S R L F A G G L T K G A S F L L E D D S E L L S A F I E R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
S S S T T
T T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence K L Y D I E F K S I D E V D F E K L S R E L D E S R D R Y R R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
B
S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	R	N	V	E	D	V	A	V	N	D	E	S	I	S	T	L	S	S	I	L	E	K	L	G	T	G	G	I	I	Y	A	R	T	G	E	E	A	E	E	I	Y	E	S	L	K	N	K	F	R	I	G	I	V	T	A	T	K	K	G	D	Y	E	K	F	V	E	G	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S				T	T	T	T					T	T	S		S							S	S										T	T	T	T	S	S						T	T	S	S	S									T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	H	L	I	G	T	A	H	R	G	L	D	L	P	E	R	I	R	F	A	V	F	V	G	C	P	S	F	R	V	T	I	E	D	I	D	S	L	S	P	Q	M	V	K	L	L	A	Y	L	Y	R	N	V	D	E	I	E	R	L	L	P	A	V	E	R	H	I	D	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										S			T	T	T								S									S		G	G	G	S										T	T	T	S							T	T		T	T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	E	I	L	K	K	V	M	G	K	E	R	P	Q	A	K	D	V	V	V	R	E	G	E	V	I	F	P	D	L	R	T	Y	I	Q	G	S	G	R	T	S	R	L	F	A	G	G	L	T	K	G	A	S	F	L	L	E	D	D	S	E	L	L	S	A	F	I	E	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S			S		S	S	S				T	T																T	T					T	T												S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	K	L	Y	D	I	E	F	K	S	I	D	E	V	D	F	E	K	L	S	R	E	L	D	E	S	R	D	R	Y	R	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S	S				B		S																				T