PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1hv8B_

Fold library id	PDB Header	Molecule	Title
c1hv8B_	PDB header: rna binding protein	Chain: B: PDB Molecule: putative atp-dependent rna helicase mj0669;	PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii

Links to external resources
Added to library: Tue Mar 16 13:25:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V E Y X N F N E L N L S D N I L N A I R N K G F E K P T D I Q X K V I P L F L N D E Y N I V A Q A R T G S G K T A S F A I P L I E L V N E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G S S
T
S
T
S
S S S S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N G I E A I I L T P T R E L A I Q V A D E I E S L K G N K N L K I A K I Y G G K A I Y P Q I K A L K N A N I V V G T P G R I L D H I N R G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S S
T T S
T
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L N L K N V K Y F I L D E A D E X L N X G F I K D V E K I L N A C N K D K R I L L F S A T X P R E I L N L A K K Y X G D Y S F I K A K I N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
T T T T T T S
S S
S S
S
S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence N I E Q S Y V E V N E N E R F E A L C R L L K N K E F Y G L V F C K T K R D T K E L A S X L R D I G F K A G A I H G D L S Q S Q R E K V I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
G G G
S T T
S S T T T T
S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L F K Q K K I R I L I A T D V X S R G I D V N D L N C V I N Y H L P Q N P E S Y X H R I G R T G R A G K K G K A I S I I N R R E Y K K L R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
T T
S
S S S
S S S T T T
T T S
S T T

. . . . . . . . . 360 . . .

Sequence I E R A X K L K I K K L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	E	Y	X	N	F	N	E	L	N	L	S	D	N	I	L	N	A	I	R	N	K	G	F	E	K	P	T	D	I	Q	X	K	V	I	P	L	F	L	N	D	E	Y	N	I	V	A	Q	A	R	T	G	S	G	K	T	A	S	F	A	I	P	L	I	E	L	V	N	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	G	G	G	S	S													T			S															T		S								S	S	S	S													S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	G	I	E	A	I	I	L	T	P	T	R	E	L	A	I	Q	V	A	D	E	I	E	S	L	K	G	N	K	N	L	K	I	A	K	I	Y	G	G	K	A	I	Y	P	Q	I	K	A	L	K	N	A	N	I	V	V	G	T	P	G	R	I	L	D	H	I	N	R	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S								S																		S	S									T	T	S											T		S															T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	N	L	K	N	V	K	Y	F	I	L	D	E	A	D	E	X	L	N	X	G	F	I	K	D	V	E	K	I	L	N	A	C	N	K	D	K	R	I	L	L	F	S	A	T	X	P	R	E	I	L	N	L	A	K	K	Y	X	G	D	Y	S	F	I	K	A	K	I	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		G	G	G								T						T	T	T	T										T	S		S	S								S	S															S								S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	N	I	E	Q	S	Y	V	E	V	N	E	N	E	R	F	E	A	L	C	R	L	L	K	N	K	E	F	Y	G	L	V	F	C	K	T	K	R	D	T	K	E	L	A	S	X	L	R	D	I	G	F	K	A	G	A	I	H	G	D	L	S	Q	S	Q	R	E	K	V	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S									G	G	G											S	T	T								S	S												T	T	T	T								S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	F	K	Q	K	K	I	R	I	L	I	A	T	D	V	X	S	R	G	I	D	V	N	D	L	N	C	V	I	N	Y	H	L	P	Q	N	P	E	S	Y	X	H	R	I	G	R	T	G	R	A	G	K	K	G	K	A	I	S	I	I	N	R	R	E	Y	K	K	L	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S	S	S						T	T								S			S					S	S			S	S								S	T	T	T			T	T	S										S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.
Sequence	I	E	R	A	X	K	L	K	I	K	K	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T						B