PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3ly5A_

Fold library id	PDB Header	Molecule	Title
c3ly5A_	PDB header: hydrolase	Chain: A: PDB Molecule: atp-dependent rna helicase ddx18;	PDBTitle: ddx18 dead-domain

Links to external resources
Added to library: Sat Aug 28 18:59:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T G A F E D T S F L V N E N T L K A I K E M G F T N M T E I Q H K S I R P L L E G R D L L A A A K T G S G K T L A F L I P A V E L I V K L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S G G G
T T
B
T
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F M P R N G T G V L I L S P T R E L A M Q T F G V L K E L M T H H V H T Y G L I M G G S N R S A E A Q K L G N G I N I I V A T P G R L L D H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S T T T
S
S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M Q N T P G F M Y K N L Q C L V I D E A D R I L D V G F E E E L K Q I I K L L P T R R Q T M L F S A T Q T R K V E D L A R I S L K K E P L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S T T
S
S S S
S S
S S

.

Sequence V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	G	A	F	E	D	T	S	F	L	V	N	E	N	T	L	K	A	I	K	E	M	G	F	T	N	M	T	E	I	Q	H	K	S	I	R	P	L	L	E	G	R	D	L	L	A	A	A	K	T	G	S	G	K	T	L	A	F	L	I	P	A	V	E	L	I	V	K	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S	G	G	G															T	T			B															T									T	T	S																	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	M	P	R	N	G	T	G	V	L	I	L	S	P	T	R	E	L	A	M	Q	T	F	G	V	L	K	E	L	M	T	H	H	V	H	T	Y	G	L	I	M	G	G	S	N	R	S	A	E	A	Q	K	L	G	N	G	I	N	I	I	V	A	T	P	G	R	L	L	D	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G									S	S															T	T	T			S							S	S	S														S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	Q	N	T	P	G	F	M	Y	K	N	L	Q	C	L	V	I	D	E	A	D	R	I	L	D	V	G	F	E	E	E	L	K	Q	I	I	K	L	L	P	T	R	R	Q	T	M	L	F	S	A	T	Q	T	R	K	V	E	D	L	A	R	I	S	L	K	K	E	P	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T				T	T								S							T	T												S		S	S	S							S	S														S	S
	.
Sequence	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)