Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2db3D_

Fold library idPDB HeaderMoleculeTitle
c2db3D_PDB header: hydrolase/rnaChain: D: PDB Molecule: atp-dependent rna helicase vasa;PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa


Added to library: Tue Mar 16 12:07:27 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPI
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)








T






TT
GGGGGS
SSS




SSTTSS


TT

S

 .........80.........90.........100.........110.........120.........130.........140
Sequence QKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TT



TTS
S



BTTB
S
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence AFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSE
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTTSS


SSS
T

S
TSS

TT

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) T
TTS
SS
S


GGG
SS
SSTT


TT

GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)

TT
S
TTT


TTS
TTS


GGGSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) S


TT

SS

SSTTSS
TT


TTT
TT



GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D