PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2oxcA_

Fold library id	PDB Header	Molecule	Title
c2oxcA_	PDB header: hydrolase	Chain: A: PDB Molecule: probable atp-dependent rna helicase ddx20;	PDBTitle: human dead-box rna helicase ddx20, dead domain in complex2 with adp

Links to external resources
Added to library: Tue Mar 16 12:21:16 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A D F E S L L L S R P V L E G L R A A G F E R P S P V Q L K A I P L G R C G L D L I V Q A K S G T G K T C V F S T I A L D S L V L E N L S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T
T T
S
T T
T T S S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q I L I L A P T R E I A V Q I H S V I T A I G I K M E G L E C H V F I G G T P L S Q D K T R L K K C H I A V G S P G R I K Q L I E L D Y L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T S T T
T T S
T T S
S
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence P G S I R L F I L D E A D K L L E E G S F Q E Q I N W I Y S S L P A S K Q M L A V S A T Y P E F L A N A L T K Y M R D P T F V R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S S T T S S S
S S
S
T T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	D	F	E	S	L	L	L	S	R	P	V	L	E	G	L	R	A	A	G	F	E	R	P	S	P	V	Q	L	K	A	I	P	L	G	R	C	G	L	D	L	I	V	Q	A	K	S	G	T	G	K	T	C	V	F	S	T	I	A	L	D	S	L	V	L	E	N	L	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	T												T	T			S														T	T									T	T	S	S															T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	I	L	I	L	A	P	T	R	E	I	A	V	Q	I	H	S	V	I	T	A	I	G	I	K	M	E	G	L	E	C	H	V	F	I	G	G	T	P	L	S	Q	D	K	T	R	L	K	K	C	H	I	A	V	G	S	P	G	R	I	K	Q	L	I	E	L	D	Y	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S															T	T	T	S	T	T								T	T	S									T	T	S		S															T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	P	G	S	I	R	L	F	I	L	D	E	A	D	K	L	L	E	E	G	S	F	Q	E	Q	I	N	W	I	Y	S	S	L	P	A	S	K	Q	M	L	A	V	S	A	T	Y	P	E	F	L	A	N	A	L	T	K	Y	M	R	D	P	T	F	V	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G							S	S						S	T	T	S	S											S		S	S								S											T	T	T		S	S