PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2kbeA_

Fold library id	PDB Header	Molecule	Title
c2kbeA_	PDB header: hydrolase	Chain: A: PDB Molecule: atp-dependent rna helicase dbp5;	PDBTitle: solution structure of amino-terminal domain of dbp5p

Links to external resources
Added to library: Sat Aug 28 17:21:46 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y E V K V K L A D I Q A D P N S P L Y S A K S F D E L G L A P E L L K G I Y A M K F Q K P S K I Q E R A L P L L L H N P P R N M I A Q S Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T T G G G
S S S
S S S S
S S S
S S
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T G K T A A F S L T M L T R V N P E D A S P Q A I C L A P S R E L A R Q T L E V V Q E M G K F T K I T S Q L I V P D S F E K N K Q I N A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S S S T T
S
S T T
S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V I V G T P G T V L D L M R R K L M Q L Q K I K I F V L D E A D N M L D Q Q G L G D Q C I R V K R F L P K D T Q L V L F S A T F A D A V R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
T T S
S T T T T T T S
S

. . . . . . . . . 220 . . . . . .

Sequence Y A K K I V P N A N T L E L Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	E	V	K	V	K	L	A	D	I	Q	A	D	P	N	S	P	L	Y	S	A	K	S	F	D	E	L	G	L	A	P	E	L	L	K	G	I	Y	A	M	K	F	Q	K	P	S	K	I	Q	E	R	A	L	P	L	L	L	H	N	P	P	R	N	M	I	A	Q	S	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		S	S	S	T	T	G	G	G								S					S	S											S	S	S	S				S									S	S			S	S							S	S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	G	K	T	A	A	F	S	L	T	M	L	T	R	V	N	P	E	D	A	S	P	Q	A	I	C	L	A	P	S	R	E	L	A	R	Q	T	L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	E	K	N	K	Q	I	N	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																		T	T										S	S															S	T	T		S							S	T	T		S			S	S					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	I	V	G	T	P	G	T	V	L	D	L	M	R	R	K	L	M	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N	M	L	D	Q	Q	G	L	G	D	Q	C	I	R	V	K	R	F	L	P	K	D	T	Q	L	V	L	F	S	A	T	F	A	D	A	V	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T							T	T	S			T	T	S															S	T	T												T	T	T	T	S							S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	Y	A	K	K	I	V	P	N	A	N	T	L	E	L	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T	S