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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2eyqA_

Fold library idPDB HeaderMoleculeTitle
c2eyqA_PDB header: hydrolaseChain: A: PDB Molecule: transcription-repair coupling factor;PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor


Added to library: Tue Mar 16 12:23:22 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA
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Known secondary structure (DSSP)

S
S




STT
B

B



TTSSSSSSGGG
SS


 .........80.........90.........100.........110.........120.........130.........140
Sequence DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL
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Known secondary structure (DSSP)


S
TT
SS


GGG

STBB


S
TT
S

 .........150.........160.........170.........180.........190.........200.........210
Sequence RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINL
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Known secondary structure (DSSP) T
SS

STTTT

TT
SS


TT


TTT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL
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Known secondary structure (DSSP)

SSSS

SS



STTSTT


TTGGGGGGGG
SS


BGGGGS
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA
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Known secondary structure (DSSP) S
STT
TTS



B

TTS

SS




TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR
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Known secondary structure (DSSP)










SSSSSTTTT

S


SSGGGT



SSGGG

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVG
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Known secondary structure (DSSP)





S
TTTTSS








GGGB

T
TT

TT
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV
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Known secondary structure (DSSP) SSS

GGG
GGGGGG


S
SSS




TT
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG
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Known secondary structure (DSSP) TS







T

S


SSS





 .........640.........650.........660.........670.........680.........690.........700
Sequence FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE
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Known secondary structure (DSSP) TTTTTT

SSSTTTT

STTS
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR
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Known secondary structure (DSSP) T

S
TS



SSSGGGS
TTSSS


TTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG
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Known secondary structure (DSSP)





B
B


TTT



SS

TTS

 .........850.........860.........870.........880.........890.........900.........910
Sequence HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY
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Known secondary structure (DSSP)
SS

TTS

SSTTGGGS

TTTTTTSS
TT

BTTB
 .........920.........930.........940.........950.........960.........970.........980
Sequence AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN
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Known secondary structure (DSSP)

GGGS
TT

SBS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG
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Known secondary structure (DSSP) T

S

GGGS





SS

S

TTTS



S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKF
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Known secondary structure (DSSP) S



S

SS

SS




GGGTTT
 .........1130.........1140......
Sequence IQDLSERKTRIEWVRQFMRELEENAI
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Known secondary structure (DSSP)



STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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