PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3berA_

Fold library id	PDB Header	Molecule	Title
c3berA_	PDB header: hydrolase	Chain: A: PDB Molecule: probable atp-dependent rna helicase ddx47;	PDBTitle: human dead-box rna-helicase ddx47, conserved domain i in2 complex with amp

Links to external resources
Added to library: Tue Mar 16 14:28:22 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T E A S Q P I V E E E E T K T F K D L G V T D V L C E A C D Q L G W T K P T K I Q I E A I P L A L Q G R D I I G L A E T G S G K T G A F A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T G G G T
T T
S
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P I L N A L L E T P Q R L F A L V L T P T R E L A F Q I S E Q F E A L G S S I G V Q S A V I V G G I D S M S Q S L A L A K K P H I I I A T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S S G G G T
T T S
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G R L I D H L E N T K G F N L R A L K Y L V M D E A D R I L N M D F E T E V D K I L K V I P R D R K T F L F S A T M T K K V Q K L Q R A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T
S T T
S S
S S S S S

. . . . . . . . . 220

Sequence K N P V K C A V S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	E	A	S	Q	P	I	V	E	E	E	E	T	K	T	F	K	D	L	G	V	T	D	V	L	C	E	A	C	D	Q	L	G	W	T	K	P	T	K	I	Q	I	E	A	I	P	L	A	L	Q	G	R	D	I	I	G	L	A	E	T	G	S	G	K	T	G	A	F	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B														T	G	G	G	T												T	T			S														T	T									T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	I	L	N	A	L	L	E	T	P	Q	R	L	F	A	L	V	L	T	P	T	R	E	L	A	F	Q	I	S	E	Q	F	E	A	L	G	S	S	I	G	V	Q	S	A	V	I	V	G	G	I	D	S	M	S	Q	S	L	A	L	A	K	K	P	H	I	I	I	A	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S			S	S							S	S																G	G	G	T								T	T	S											T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	R	L	I	D	H	L	E	N	T	K	G	F	N	L	R	A	L	K	Y	L	V	M	D	E	A	D	R	I	L	N	M	D	F	E	T	E	V	D	K	I	L	K	V	I	P	R	D	R	K	T	F	L	F	S	A	T	M	T	K	K	V	Q	K	L	Q	R	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	T	T				T	T								S							T	T											S	S		S	S	S							S	S
	.	.	.	.	.	.	.	.	.	220
Sequence	K	N	P	V	K	C	A	V	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S