PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3iuyB_

Fold library id	PDB Header	Molecule	Title
c3iuyB_	PDB header: hydrolase	Chain: B: PDB Molecule: probable atp-dependent rna helicase ddx53;	PDBTitle: crystal structure of ddx53 dead-box domain

Links to external resources
Added to library: Sat Aug 28 18:30:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M T C D D L K S G E K R L I P K P T C R F K D A F Q Q Y P D L L K S I I R V G I L K P T P I Q S Q A W P I I L Q G I D L I V V A Q T G T G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S T T
T
S
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T L S Y L M P G F I H L D S N G P G M L V L T P T R E L A L H V E A E C S K Y S Y K G L K S I C I Y G V D I I I A T P G R L N D L Q M N N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S S
T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence V N L R S I T Y L V I D E A D K M L D M E F E P Q I R K I L L D V R P D R Q T V M T S A T W P D T V R Q L A L S Y L K D P M I V Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T
S
S S
S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	T	C	D	D	L	K	S	G	E	K	R	L	I	P	K	P	T	C	R	F	K	D	A	F	Q	Q	Y	P	D	L	L	K	S	I	I	R	V	G	I	L	K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	G	I	D	L	I	V	V	A	Q	T	G	T	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S										S						T	T												T			S														T	T									T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G	L	K	S	I	C	I	Y	G	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T					S						S	S																	T	T										S															T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L	A	L	S	Y	L	K	D	P	M	I	V	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			T	T															T	T												S		S	S								S	S														S	S