Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32138
DateThu Jan 5 11:49:24 GMT 2012
Unique Job ID3f3c2ab55792dd40

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3lppA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:sucrase-isomaltase;
PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol
Confidence and coverage
Confidence:100.0% Coverage: 92%
622 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHSKDNPCLWIGSGIADIDMFRGNFSIKDK
Secondary structure 
SS confidence 
Disorder  ???????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LQEKIALTDAIVSQSPDGWLIHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLR
Secondary structure 
SS confidence 
Disorder  ??????????????
?
?
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQTYVTWQADCKENAGGDYYWT
Secondary structure 
SS confidence 
Disorder 
??
?
???
?
????
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  FFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  RVMWNWKWNSENYPQLDSRIKQWNQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCGGWMADFGEYLPTDTYLHNGV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGN
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  RPGDNWQFDGDAETIAHFARMTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHT
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  YTLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWTGEAFRGGEVTVNAPIGKPPV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........670........
Sequence  FYRADSEWAALFASLKSI
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3lpp chain A

3D model

Region: 7 - 670
Aligned: 622
Modelled: 632
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:sucrase-isomaltase;
PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol

Phyre2

PDB 2qmj chain A

3D model

Region: 12 - 670
Aligned: 622
Modelled: 631
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose

Phyre2

PDB 3top chain A

3D model

Region: 54 - 670
Aligned: 579
Modelled: 589
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the c-terminal subunit of human maltase-2 glucoamylase in complex with acarbose

Phyre2

PDB 1xsi chain F

3D model

Region: 22 - 678
Aligned: 614
Modelled: 629
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: F: PDB Molecule:putative family 31 glucosidase yici;
PDBTitle: structure of a family 31 alpha glycosidase

Phyre2

PDB 2xvg chain A

3D model

Region: 12 - 670
Aligned: 617
Modelled: 625
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha xylosidase;
PDBTitle: crystal structure of alpha-xylosidase (gh31) from2 cellvibrio japonicus

Phyre2

PDB 2g3n chain A

3D model

Region: 72 - 670
Aligned: 564
Modelled: 581
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside

Phyre2

PDB 3ffj chain A

3D model

Region: 113 - 670
Aligned: 521
Modelled: 518
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase (family 31);
PDBTitle: the crystal structure of the glycosyl hydrolase (family 31) from2 ruminococcus obeum atcc 29174

Phyre2

PDB 2x2i chain B

3D model

Region: 65 - 670
Aligned: 586
Modelled: 594
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1;
PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose

Phyre2

PDB 2f2h chain A domain 4

3D model

Region: 233 - 584
Aligned: 334
Modelled: 352
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: YicI catalytic domain-like

Phyre2

PDB 1zy9 chain A

3D model

Region: 95 - 565
Aligned: 427
Modelled: 451
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution

Phyre2

PDB 2yfn chain A

3D model

Region: 16 - 646
Aligned: 554
Modelled: 605
Confidence: 100.0%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask

Phyre2

PDB 2f2h chain A domain 3

3D model

Region: 585 - 664
Aligned: 79
Modelled: 80
Confidence: 100.0%
Identity: 34%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: Putative glucosidase YicI, domain 3

Phyre2

PDB 2f2h chain A domain 2

3D model

Region: 2 - 232
Aligned: 196
Modelled: 195
Confidence: 100.0%
Identity: 15%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: YicI N-terminal domain-like

Phyre2

PDB 2xn1 chain B

3D model

Region: 36 - 663
Aligned: 592
Modelled: 621
Confidence: 100.0%
Identity: 12%
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris

Phyre2

PDB 1zy9 chain A domain 2

3D model

Region: 258 - 531
Aligned: 253
Modelled: 272
Confidence: 99.9%
Identity: 11%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: YicI catalytic domain-like

Phyre2

PDB 3mi6 chain A

3D model

Region: 16 - 574
Aligned: 521
Modelled: 549
Confidence: 99.8%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.

Phyre2

PDB 3cc1 chain B

3D model

Region: 236 - 504
Aligned: 237
Modelled: 255
Confidence: 99.7%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution

Phyre2

PDB 1uas chain A domain 2

3D model

Region: 244 - 534
Aligned: 223
Modelled: 241
Confidence: 99.5%
Identity: 14%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1uas chain A

3D model

Region: 244 - 534
Aligned: 225
Modelled: 241
Confidence: 99.5%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase

Phyre2

PDB 1szn chain A domain 2

3D model

Region: 244 - 534
Aligned: 261
Modelled: 285
Confidence: 99.5%
Identity: 11%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2
1
c3lppA_
2
c2qmjA_
3
c3topA_
4
c1xsiF_
5
c2xvgA_
6
c2g3nA_
7
c3ffjA_
8
c2x2iB_
9
d2f2ha4
10
c1zy9A_
11
c2yfnA_
12
d2f2ha3
13
d2f2ha2
14
c2xn1B_
15
d1zy9a2
16
c3mi6A_
17
c3cc1B_
18
d1uasa2
19
c1uasA_
20
d1szna2
21
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3lppA_
100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:sucrase-isomaltase;
PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol
2c2qmjA_
100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
3c3topA_
100.0 20 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the c-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
4c1xsiF_
100.0 22 PDB header:hydrolase
Chain: F: PDB Molecule:putative family 31 glucosidase yici;
PDBTitle: structure of a family 31 alpha glycosidase
5c2xvgA_
100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:alpha xylosidase;
PDBTitle: crystal structure of alpha-xylosidase (gh31) from2 cellvibrio japonicus
6c2g3nA_
100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside
7c3ffjA_
100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase (family 31);
PDBTitle: the crystal structure of the glycosyl hydrolase (family 31) from2 ruminococcus obeum atcc 29174
8c2x2iB_
100.0 18 PDB header:lyase
Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1;
PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose
9d2f2ha4
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
10c1zy9A_
100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution
11c2yfnA_
100.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
12d2f2ha3
100.0 34 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Putative glucosidase YicI, domain 3
13d2f2ha2
100.0 15 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:YicI N-terminal domain-like
14c2xn1B_
100.0 12 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
15d1zy9a2
99.9 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
16c3mi6A_
99.8 10 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
17c3cc1B_
99.7 14 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution
18d1uasa2
99.5 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
19c1uasA_
99.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
20d1szna2
99.5 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
21c2wskA_
not modelled 99.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
22c3a5vA_
not modelled 99.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea
23c3lrmB_
not modelled 99.2 14 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase 1;
PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose
24c3dhuC_
not modelled 99.2 13 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
25c3a23A_
not modelled 99.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:putative secreted alpha-galactosidase;
PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose
26d1r46a2
not modelled 99.1 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
27c1t0oA_
not modelled 99.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose
28c1r46B_
not modelled 99.0 13 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase a;
PDBTitle: structure of human alpha-galactosidase
29d1ktba2
not modelled 98.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
30c1gviA_
not modelled 98.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
31c1ktbA_
not modelled 98.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: the structure of alpha-n-acetylgalactosaminidase
32c1ea9D_
not modelled 98.5 14 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
33d1gvia3
not modelled 98.4 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
34c3a47A_
not modelled 98.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
35d1j0ha3
not modelled 98.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
36d1ea9c3
not modelled 98.4 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
37d1m53a2
not modelled 98.3 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
38c1uokA_
not modelled 98.2 13 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
39c1jibA_
not modelled 98.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
40c2ze0A_
not modelled 98.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
41d1uoka2
not modelled 98.2 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
42c1bagA_
not modelled 98.2 10 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
43c1m53A_
not modelled 98.2 16 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
44c2wanA_
not modelled 98.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
45c1zjaB_
not modelled 98.2 14 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
46c1gcyA_
not modelled 98.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
47c2zidA_
not modelled 98.1 17 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
48c2aaaA_
not modelled 98.1 14 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
49d2bhua3
not modelled 98.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
50d1h3ga3
not modelled 98.0 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
51c1lwhA_
not modelled 98.0 12 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
52c3edeB_
not modelled 98.0 10 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
53d2aaaa2
not modelled 97.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
54d1m7xa3
not modelled 97.9 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
55c1wzaA_
not modelled 97.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
56d1lwha2
not modelled 97.9 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
57c3czkA_
not modelled 97.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
58d1eh9a3
not modelled 97.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
59c1ehaA_
not modelled 97.9 13 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
60d1bf2a3
not modelled 97.9 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
61c2wcsA_
not modelled 97.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
62c3faxA_
not modelled 97.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
63c2e8yA_
not modelled 97.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
64c2qpuB_
not modelled 97.9 20 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
65d1ht6a2
not modelled 97.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
66c3k1dA_
not modelled 97.8 14 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
67d1avaa2
not modelled 97.8 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
68c1bf2A_
not modelled 97.8 11 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
69c1jdaA_
not modelled 97.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
70d1wzla3
not modelled 97.8 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
71d2guya2
not modelled 97.8 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
72c2vncB_
not modelled 97.8 10 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
73c2taaA_
not modelled 97.8 11 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
74d1qhoa4
not modelled 97.8 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
75c2z1kA_
not modelled 97.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
76c2by0A_
not modelled 97.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
77d1gcya2
not modelled 97.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
78d1ua7a2
not modelled 97.7 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
79c3m07A_
not modelled 97.7 13 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
80c1tcmB_
not modelled 97.7 18 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
81c1cygA_
not modelled 97.7 15 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
82c2ya0A_
not modelled 97.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
83d1g5aa2
not modelled 97.7 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
84c3ucqA_
not modelled 97.6 14 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis
85c3amkA_
not modelled 97.6 12 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
86d1wzaa2
not modelled 97.6 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
87c3zt5D_
not modelled 97.6 10 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
88c1qhoA_
not modelled 97.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
89c1jaeA_
not modelled 97.6 13 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
90c2x4bA_
not modelled 97.6 10 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
91c2d0gA_
not modelled 97.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
92c1m7xC_
not modelled 97.5 8 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
93c2ya1A_
not modelled 97.5 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
94d1jaea2
not modelled 97.5 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
95c2dh3A_
not modelled 97.5 15 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
96d3bmva4
not modelled 97.4 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97c1e40A_
not modelled 97.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
98c1jgiA_
not modelled 97.3 9 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
99d1pama4
not modelled 97.2 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
100c1jd7A_
not modelled 97.2 11 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
101c3bmwA_
not modelled 97.2 16 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
102d3dhpa2
not modelled 97.2 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
103d1cyga4
not modelled 97.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
104c1hvxA_
not modelled 97.2 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
105c3amlA_
not modelled 97.2 12 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
106c1wpcA_
not modelled 97.1 17 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
107d1cxla4
not modelled 97.1 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
108d1hx0a2
not modelled 97.1 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
109d2fhfa5
not modelled 97.1 7 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
110c1ud8A_
not modelled 97.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
111d1cgta4
not modelled 97.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
112c3blpX_
not modelled 96.9 15 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
113c2fhfA_
not modelled 96.9 8 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
114d1hvxa2
not modelled 96.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
115d1ud2a2
not modelled 96.8 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
116d1ob0a2
not modelled 96.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
117d1e43a2
not modelled 96.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
118c1gjuA_
not modelled 96.6 29 PDB header:transferase
Chain: A: PDB Molecule:maltodextrin glycosyltransferase;
PDBTitle: maltosyltransferase from thermotoga maritima
119c3bc9A_
not modelled 96.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose
120d1g94a2
not modelled 96.5 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0